miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 536 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 624 0.67 0.79262
Target:  5'- cGCGCGUugaAGUCUAuGGgcGCgGGGUGGGg -3'
miRNA:   3'- aUGCGCA---UCGGGU-CCuuCG-CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 1006 0.67 0.828162
Target:  5'- gGgGCGgggGGC--GGGggGCGGGUGGGc -3'
miRNA:   3'- aUgCGCa--UCGggUCCuuCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 2477 0.71 0.580948
Target:  5'- gGCGCcagGGCUCGGGGaagAGCGGGUGGu -3'
miRNA:   3'- aUGCGca-UCGGGUCCU---UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 4097 0.68 0.754698
Target:  5'- cAgGCGcAGCCCAGGggGUcgaGGcgGAa -3'
miRNA:   3'- aUgCGCaUCGGGUCCuuCG---CCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 7065 0.72 0.510243
Target:  5'- gGCGUGUGGCCCAGG-GGCaGGAc--- -3'
miRNA:   3'- aUGCGCAUCGGGUCCuUCG-CCUacuc -5'
23574 5' -56.3 NC_005261.1 + 8783 0.66 0.844867
Target:  5'- aUACGCGUGaCUCGGGuGGUGGAguugcgGGGa -3'
miRNA:   3'- -AUGCGCAUcGGGUCCuUCGCCUa-----CUC- -5'
23574 5' -56.3 NC_005261.1 + 8934 0.71 0.570681
Target:  5'- gGCGCGgGGCgCCGGG-GGCGGgcGGGg -3'
miRNA:   3'- aUGCGCaUCG-GGUCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 9606 0.66 0.860777
Target:  5'- -cCGCcucgGGCCCGGGGugggcaGGCGGGggUGGGg -3'
miRNA:   3'- auGCGca--UCGGGUCCU------UCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 10005 0.74 0.419828
Target:  5'- aGCGCGggcgGGCCCAauaagaaagcggugcGGggGCGGGguUGAGc -3'
miRNA:   3'- aUGCGCa---UCGGGU---------------CCuuCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 11296 0.69 0.694672
Target:  5'- cGCGCGUcGCagGGGAGGUGGG-GAGg -3'
miRNA:   3'- aUGCGCAuCGggUCCUUCGCCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 11696 0.73 0.500417
Target:  5'- gGCGCGUGGCCgAGGc-GCGGcgGGc -3'
miRNA:   3'- aUGCGCAUCGGgUCCuuCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 12409 0.67 0.810724
Target:  5'- cACGaCGgAGCCCuccaGggGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGGuc--CuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 13073 0.66 0.860777
Target:  5'- gGCGCGUccgccGGCCCGucGGcGGGCGGcgGGc -3'
miRNA:   3'- aUGCGCA-----UCGGGU--CC-UUCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 13686 0.66 0.844867
Target:  5'- gGCGCGcgGGCgUGGGGcggGGCGGGcUGGGg -3'
miRNA:   3'- aUGCGCa-UCGgGUCCU---UCGCCU-ACUC- -5'
23574 5' -56.3 NC_005261.1 + 13987 0.67 0.801751
Target:  5'- cGCGCGgcgccuGCCCGcGGcGGCGGuUGGGc -3'
miRNA:   3'- aUGCGCau----CGGGU-CCuUCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 14186 0.66 0.852925
Target:  5'- gGCGCGggucaGGCCCAGGGAGgaagaCGGGc--- -3'
miRNA:   3'- aUGCGCa----UCGGGUCCUUC-----GCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 15029 0.67 0.810724
Target:  5'- gGCGgGU-GCCgGGGGcguAGCGGggGGGg -3'
miRNA:   3'- aUGCgCAuCGGgUCCU---UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 17426 0.71 0.579919
Target:  5'- aUACGCGUGGUCUuuuggcguggAGGAgaaggagaagggaGGCGGAUGGa -3'
miRNA:   3'- -AUGCGCAUCGGG----------UCCU-------------UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 18299 0.68 0.744916
Target:  5'- gGC-CGUAGCCCAGGAAGUaGAcGuAGg -3'
miRNA:   3'- aUGcGCAUCGGGUCCUUCGcCUaC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.