miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 138219 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 137433 0.68 0.78334
Target:  5'- cGCGCGUggggggcggcGGCgCGGGggGgGGgcGGGg -3'
miRNA:   3'- aUGCGCA----------UCGgGUCCuuCgCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 136855 0.72 0.55029
Target:  5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3'
miRNA:   3'- augCGCAUCGGGUCCUuCGCCUacUC- -5'
23574 5' -56.3 NC_005261.1 + 136592 0.7 0.643078
Target:  5'- aGCGCGgcgcuggGGCUCGGGGAGcCGGAcuucgcgGAGg -3'
miRNA:   3'- aUGCGCa------UCGGGUCCUUC-GCCUa------CUC- -5'
23574 5' -56.3 NC_005261.1 + 135873 0.66 0.860777
Target:  5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3'
miRNA:   3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 133544 0.66 0.869168
Target:  5'- gGCGCGcagcgcagcaugcuGCUCGGGggGCGGAcGGc -3'
miRNA:   3'- aUGCGCau------------CGGGUCCuuCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 133303 0.66 0.844867
Target:  5'- gGCGCGggcGCUCGcGGccGCGGcgGAGg -3'
miRNA:   3'- aUGCGCau-CGGGU-CCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 131836 0.7 0.643078
Target:  5'- cGCGCGcgGGUCaAGGggGCGGAacgGGGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 129905 0.71 0.580948
Target:  5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 128215 0.71 0.611943
Target:  5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 128024 0.67 0.828162
Target:  5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3'
miRNA:   3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 127716 0.72 0.540178
Target:  5'- cUGCGCGUGGCCUgccugguagcGGGAgcuuGGCGGcgGGa -3'
miRNA:   3'- -AUGCGCAUCGGG----------UCCU----UCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 127482 0.68 0.78334
Target:  5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 125729 0.74 0.443384
Target:  5'- cGCGCGgucGCCCGGGggGCauGGA-GAGu -3'
miRNA:   3'- aUGCGCau-CGGGUCCuuCG--CCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 122243 0.68 0.754698
Target:  5'- aGCGCGcuGCCCGGGuGAGCGGcccGGGc -3'
miRNA:   3'- aUGCGCauCGGGUCC-UUCGCCua-CUC- -5'
23574 5' -56.3 NC_005261.1 + 121853 0.69 0.674132
Target:  5'- gACgGCGaGGCCCAcGGAgaaGGCGGcgGGGa -3'
miRNA:   3'- aUG-CGCaUCGGGU-CCU---UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 120883 0.66 0.875838
Target:  5'- cUGgGCGggguGCCCGGGcgGGGCGGGagcUGGGc -3'
miRNA:   3'- -AUgCGCau--CGGGUCC--UUCGCCU---ACUC- -5'
23574 5' -56.3 NC_005261.1 + 119285 0.7 0.65345
Target:  5'- gGCGgGggcucGCCgAGGAAGCGGAgggcGAGg -3'
miRNA:   3'- aUGCgCau---CGGgUCCUUCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 117761 0.68 0.77392
Target:  5'- aACGCGacucgGGUCCGGaucGggGCGGGgagGAGg -3'
miRNA:   3'- aUGCGCa----UCGGGUC---CuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 115813 0.69 0.694672
Target:  5'- cGCGCGUcGCagGGGAGGUGGG-GAGg -3'
miRNA:   3'- aUGCGCAuCGggUCCUUCGCCUaCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.