Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 138219 | 0.67 | 0.79262 |
Target: 5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3' miRNA: 3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 137433 | 0.68 | 0.78334 |
Target: 5'- cGCGCGUggggggcggcGGCgCGGGggGgGGgcGGGg -3' miRNA: 3'- aUGCGCA----------UCGgGUCCuuCgCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 136855 | 0.72 | 0.55029 |
Target: 5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3' miRNA: 3'- augCGCAUCGGGUCCUuCGCCUacUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 136592 | 0.7 | 0.643078 |
Target: 5'- aGCGCGgcgcuggGGCUCGGGGAGcCGGAcuucgcgGAGg -3' miRNA: 3'- aUGCGCa------UCGGGUCCUUC-GCCUa------CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 135873 | 0.66 | 0.860777 |
Target: 5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3' miRNA: 3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 133544 | 0.66 | 0.869168 |
Target: 5'- gGCGCGcagcgcagcaugcuGCUCGGGggGCGGAcGGc -3' miRNA: 3'- aUGCGCau------------CGGGUCCuuCGCCUaCUc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 133303 | 0.66 | 0.844867 |
Target: 5'- gGCGCGggcGCUCGcGGccGCGGcgGAGg -3' miRNA: 3'- aUGCGCau-CGGGU-CCuuCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 131836 | 0.7 | 0.643078 |
Target: 5'- cGCGCGcgGGUCaAGGggGCGGAacgGGGg -3' miRNA: 3'- aUGCGCa-UCGGgUCCuuCGCCUa--CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 129905 | 0.71 | 0.580948 |
Target: 5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3' miRNA: 3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 128215 | 0.71 | 0.611943 |
Target: 5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3' miRNA: 3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 128024 | 0.67 | 0.828162 |
Target: 5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3' miRNA: 3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 127716 | 0.72 | 0.540178 |
Target: 5'- cUGCGCGUGGCCUgccugguagcGGGAgcuuGGCGGcgGGa -3' miRNA: 3'- -AUGCGCAUCGGG----------UCCU----UCGCCuaCUc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 127482 | 0.68 | 0.78334 |
Target: 5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3' miRNA: 3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 125729 | 0.74 | 0.443384 |
Target: 5'- cGCGCGgucGCCCGGGggGCauGGA-GAGu -3' miRNA: 3'- aUGCGCau-CGGGUCCuuCG--CCUaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 122243 | 0.68 | 0.754698 |
Target: 5'- aGCGCGcuGCCCGGGuGAGCGGcccGGGc -3' miRNA: 3'- aUGCGCauCGGGUCC-UUCGCCua-CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 121853 | 0.69 | 0.674132 |
Target: 5'- gACgGCGaGGCCCAcGGAgaaGGCGGcgGGGa -3' miRNA: 3'- aUG-CGCaUCGGGU-CCU---UCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 120883 | 0.66 | 0.875838 |
Target: 5'- cUGgGCGggguGCCCGGGcgGGGCGGGagcUGGGc -3' miRNA: 3'- -AUgCGCau--CGGGUCC--UUCGCCU---ACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 119285 | 0.7 | 0.65345 |
Target: 5'- gGCGgGggcucGCCgAGGAAGCGGAgggcGAGg -3' miRNA: 3'- aUGCgCau---CGGgUCCUUCGCCUa---CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 117761 | 0.68 | 0.77392 |
Target: 5'- aACGCGacucgGGUCCGGaucGggGCGGGgagGAGg -3' miRNA: 3'- aUGCGCa----UCGGGUC---CuuCGCCUa--CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 115813 | 0.69 | 0.694672 |
Target: 5'- cGCGCGUcGCagGGGAGGUGGG-GAGg -3' miRNA: 3'- aUGCGCAuCGggUCCUUCGCCUaCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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