miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 34812 0.7 0.622317
Target:  5'- cGCGCGUGGCCgCGGcccgcGCGGAgcugGAGg -3'
miRNA:   3'- aUGCGCAUCGG-GUCcuu--CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 100487 0.71 0.580948
Target:  5'- gGCGCGgcGCCCgcGGGggGCGacgGGGg -3'
miRNA:   3'- aUGCGCauCGGG--UCCuuCGCcuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 106994 0.71 0.580948
Target:  5'- gGCGCcagGGCUCGGGGaagAGCGGGUGGu -3'
miRNA:   3'- aUGCGca-UCGGGUCCU---UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 129905 0.71 0.580948
Target:  5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 102786 0.71 0.580948
Target:  5'- cGCGCcUAGCCCGcGggGCGGgcGGGc -3'
miRNA:   3'- aUGCGcAUCGGGUcCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 83422 0.71 0.610907
Target:  5'- gACGCGgaccuggUGGCCUAcgcGGAGGCGGcgGGGc -3'
miRNA:   3'- aUGCGC-------AUCGGGU---CCUUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 128215 0.71 0.611943
Target:  5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 34067 0.71 0.611943
Target:  5'- cGCGCGgcGCCCGcGGAcGGCGcGGUGGc -3'
miRNA:   3'- aUGCGCauCGGGU-CCU-UCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 46633 0.7 0.622317
Target:  5'- gGCGCcgacgguGCCCAGGAGGUGGGaGAa -3'
miRNA:   3'- aUGCGcau----CGGGUCCUUCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 17426 0.71 0.579919
Target:  5'- aUACGCGUGGUCUuuuggcguggAGGAgaaggagaagggaGGCGGAUGGa -3'
miRNA:   3'- -AUGCGCAUCGGG----------UCCU-------------UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 34868 0.71 0.570681
Target:  5'- cGCGCGgccgAGCUgGGGGAGCGGcgcgcgGAGc -3'
miRNA:   3'- aUGCGCa---UCGGgUCCUUCGCCua----CUC- -5'
23574 5' -56.3 NC_005261.1 + 8934 0.71 0.570681
Target:  5'- gGCGCGgGGCgCCGGG-GGCGGgcGGGg -3'
miRNA:   3'- aUGCGCaUCG-GGUCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 10005 0.74 0.419828
Target:  5'- aGCGCGggcgGGCCCAauaagaaagcggugcGGggGCGGGguUGAGc -3'
miRNA:   3'- aUGCGCa---UCGGGU---------------CCuuCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 79689 0.74 0.443384
Target:  5'- gGCGCaggAGCCCGGGcGGCGGcUGGGc -3'
miRNA:   3'- aUGCGca-UCGGGUCCuUCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 125729 0.74 0.443384
Target:  5'- cGCGCGgucGCCCGGGggGCauGGA-GAGu -3'
miRNA:   3'- aUGCGCau-CGGGUCCuuCG--CCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 75662 0.73 0.462002
Target:  5'- cUGCGCGUGGCgCCGGGGcgcaugcuGGCGGcgccucucggcGUGGGg -3'
miRNA:   3'- -AUGCGCAUCG-GGUCCU--------UCGCC-----------UACUC- -5'
23574 5' -56.3 NC_005261.1 + 11696 0.73 0.500417
Target:  5'- gGCGCGUGGCCgAGGc-GCGGcgGGc -3'
miRNA:   3'- aUGCGCAUCGGgUCCuuCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 111583 0.72 0.510243
Target:  5'- gGCGUGUGGCCCAGG-GGCaGGAc--- -3'
miRNA:   3'- aUGCGCAUCGGGUCCuUCG-CCUacuc -5'
23574 5' -56.3 NC_005261.1 + 99497 0.72 0.520148
Target:  5'- gGCGCG-GGCCCGGGcucuGCGGGcgcUGGGg -3'
miRNA:   3'- aUGCGCaUCGGGUCCuu--CGCCU---ACUC- -5'
23574 5' -56.3 NC_005261.1 + 136855 0.72 0.55029
Target:  5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3'
miRNA:   3'- augCGCAUCGGGUCCUuCGCCUacUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.