miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 115788 1.08 0.002594
Target:  5'- gUACGCGUAGCCCAGGAAGCGGAUGAGg -3'
miRNA:   3'- -AUGCGCAUCGGGUCCUUCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 56337 0.79 0.206148
Target:  5'- -cCGCGUucaugcuggcGGCCgCAGGggGCGGGUGGGu -3'
miRNA:   3'- auGCGCA----------UCGG-GUCCuuCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 58511 0.75 0.365213
Target:  5'- gGCGCccgcGUCCAGGAGGCGGAUcGAGc -3'
miRNA:   3'- aUGCGcau-CGGGUCCUUCGCCUA-CUC- -5'
23574 5' -56.3 NC_005261.1 + 110247 0.74 0.407461
Target:  5'- gGCGCGgcGCCCGGGggGCuGcgGGc -3'
miRNA:   3'- aUGCGCauCGGGUCCuuCGcCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 10005 0.74 0.419828
Target:  5'- aGCGCGggcgGGCCCAauaagaaagcggugcGGggGCGGGguUGAGc -3'
miRNA:   3'- aUGCGCa---UCGGGU---------------CCuuCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 79689 0.74 0.443384
Target:  5'- gGCGCaggAGCCCGGGcGGCGGcUGGGc -3'
miRNA:   3'- aUGCGca-UCGGGUCCuUCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 125729 0.74 0.443384
Target:  5'- cGCGCGgucGCCCGGGggGCauGGA-GAGu -3'
miRNA:   3'- aUGCGCau-CGGGUCCuuCG--CCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 75662 0.73 0.462002
Target:  5'- cUGCGCGUGGCgCCGGGGcgcaugcuGGCGGcgccucucggcGUGGGg -3'
miRNA:   3'- -AUGCGCAUCG-GGUCCU--------UCGCC-----------UACUC- -5'
23574 5' -56.3 NC_005261.1 + 11696 0.73 0.500417
Target:  5'- gGCGCGUGGCCgAGGc-GCGGcgGGc -3'
miRNA:   3'- aUGCGCAUCGGgUCCuuCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 71624 0.73 0.500417
Target:  5'- gGCGCG-GGCCCGGGcGGCGGGa--- -3'
miRNA:   3'- aUGCGCaUCGGGUCCuUCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 7065 0.72 0.510243
Target:  5'- gGCGUGUGGCCCAGG-GGCaGGAc--- -3'
miRNA:   3'- aUGCGCAUCGGGUCCuUCG-CCUacuc -5'
23574 5' -56.3 NC_005261.1 + 111583 0.72 0.510243
Target:  5'- gGCGUGUGGCCCAGG-GGCaGGAc--- -3'
miRNA:   3'- aUGCGCAUCGGGUCCuUCG-CCUacuc -5'
23574 5' -56.3 NC_005261.1 + 99497 0.72 0.520148
Target:  5'- gGCGCG-GGCCCGGGcucuGCGGGcgcUGGGg -3'
miRNA:   3'- aUGCGCaUCGGGUCCuu--CGCCU---ACUC- -5'
23574 5' -56.3 NC_005261.1 + 127716 0.72 0.540178
Target:  5'- cUGCGCGUGGCCUgccugguagcGGGAgcuuGGCGGcgGGa -3'
miRNA:   3'- -AUGCGCAUCGGG----------UCCU----UCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 32338 0.72 0.55029
Target:  5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3'
miRNA:   3'- augCGCAUCGGGUCCUuCGCCUacUC- -5'
23574 5' -56.3 NC_005261.1 + 136855 0.72 0.55029
Target:  5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3'
miRNA:   3'- augCGCAUCGGGUCCUuCGCCUacUC- -5'
23574 5' -56.3 NC_005261.1 + 90021 0.72 0.55029
Target:  5'- cUGCGCcUGGCCCGGGA-GCGGGg--- -3'
miRNA:   3'- -AUGCGcAUCGGGUCCUuCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 34868 0.71 0.570681
Target:  5'- cGCGCGgccgAGCUgGGGGAGCGGcgcgcgGAGc -3'
miRNA:   3'- aUGCGCa---UCGGgUCCUUCGCCua----CUC- -5'
23574 5' -56.3 NC_005261.1 + 8934 0.71 0.570681
Target:  5'- gGCGCGgGGCgCCGGG-GGCGGgcGGGg -3'
miRNA:   3'- aUGCGCaUCG-GGUCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 17426 0.71 0.579919
Target:  5'- aUACGCGUGGUCUuuuggcguggAGGAgaaggagaagggaGGCGGAUGGa -3'
miRNA:   3'- -AUGCGCAUCGGG----------UCCU-------------UCGCCUACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.