miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 25388 0.71 0.580948
Target:  5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 2477 0.71 0.580948
Target:  5'- gGCGCcagGGCUCGGGGaagAGCGGGUGGu -3'
miRNA:   3'- aUGCGca-UCGGGUCCU---UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 129905 0.71 0.580948
Target:  5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 100487 0.71 0.580948
Target:  5'- gGCGCGgcGCCCgcGGGggGCGacgGGGg -3'
miRNA:   3'- aUGCGCauCGGG--UCCuuCGCcuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 102786 0.71 0.580948
Target:  5'- cGCGCcUAGCCCGcGggGCGGgcGGGc -3'
miRNA:   3'- aUGCGcAUCGGGUcCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 106994 0.71 0.580948
Target:  5'- gGCGCcagGGCUCGGGGaagAGCGGGUGGu -3'
miRNA:   3'- aUGCGca-UCGGGUCCU---UCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 83422 0.71 0.610907
Target:  5'- gACGCGgaccuggUGGCCUAcgcGGAGGCGGcgGGGc -3'
miRNA:   3'- aUGCGC-------AUCGGGU---CCUUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 34067 0.71 0.611943
Target:  5'- cGCGCGgcGCCCGcGGAcGGCGcGGUGGc -3'
miRNA:   3'- aUGCGCauCGGGU-CCU-UCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 128215 0.71 0.611943
Target:  5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 23698 0.71 0.611943
Target:  5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 47771 0.7 0.622317
Target:  5'- gGCGCGUcuCCCGGuaGAAGCGGAaGGGc -3'
miRNA:   3'- aUGCGCAucGGGUC--CUUCGCCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 62880 0.7 0.622317
Target:  5'- aUGCGCGgcgcAGCCCGcGcGAGGCGGGgcgGGGc -3'
miRNA:   3'- -AUGCGCa---UCGGGU-C-CUUCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 46633 0.7 0.622317
Target:  5'- gGCGCcgacgguGCCCAGGAGGUGGGaGAa -3'
miRNA:   3'- aUGCGcau----CGGGUCCUUCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 34812 0.7 0.622317
Target:  5'- cGCGCGUGGCCgCGGcccgcGCGGAgcugGAGg -3'
miRNA:   3'- aUGCGCAUCGG-GUCcuu--CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 111468 0.7 0.632697
Target:  5'- --gGCGaGGCCaaaAGGcGGGCGGGUGAGa -3'
miRNA:   3'- augCGCaUCGGg--UCC-UUCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 136592 0.7 0.643078
Target:  5'- aGCGCGgcgcuggGGCUCGGGGAGcCGGAcuucgcgGAGg -3'
miRNA:   3'- aUGCGCa------UCGGGUCCUUC-GCCUa------CUC- -5'
23574 5' -56.3 NC_005261.1 + 32074 0.7 0.643078
Target:  5'- aGCGCGgcgcuggGGCUCGGGGAGcCGGAcuucgcgGAGg -3'
miRNA:   3'- aUGCGCa------UCGGGUCCUUC-GCCUa------CUC- -5'
23574 5' -56.3 NC_005261.1 + 27319 0.7 0.643078
Target:  5'- cGCGCGcgGGUCaAGGggGCGGAacgGGGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 95624 0.7 0.643078
Target:  5'- -cCGCGcGGUCCAGGA-GCGGcUGGGc -3'
miRNA:   3'- auGCGCaUCGGGUCCUuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 131836 0.7 0.643078
Target:  5'- cGCGCGcgGGUCaAGGggGCGGAacgGGGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCuuCGCCUa--CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.