miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 114123 0.66 0.860777
Target:  5'- -cCGCcucgGGCCCGGGGugggcaGGCGGGggUGGGg -3'
miRNA:   3'- auGCGca--UCGGGUCCU------UCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 33141 0.66 0.852925
Target:  5'- -cCGCGgaaGGUCCGGGgcGCGGAg--- -3'
miRNA:   3'- auGCGCa--UCGGGUCCuuCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 8783 0.66 0.844867
Target:  5'- aUACGCGUGaCUCGGGuGGUGGAguugcgGGGa -3'
miRNA:   3'- -AUGCGCAUcGGGUCCuUCGCCUa-----CUC- -5'
23574 5' -56.3 NC_005261.1 + 13686 0.66 0.844867
Target:  5'- gGCGCGcgGGCgUGGGGcggGGCGGGcUGGGg -3'
miRNA:   3'- aUGCGCa-UCGgGUCCU---UCGCCU-ACUC- -5'
23574 5' -56.3 NC_005261.1 + 42658 0.66 0.852925
Target:  5'- -uCGCcggGGCCCAuGAAGCGGAacGAGa -3'
miRNA:   3'- auGCGca-UCGGGUcCUUCGCCUa-CUC- -5'
23574 5' -56.3 NC_005261.1 + 64760 0.66 0.860777
Target:  5'- cGCGcCGcGGCCCAGGGggGGCGcGcgGAc -3'
miRNA:   3'- aUGC-GCaUCGGGUCCU--UCGC-CuaCUc -5'
23574 5' -56.3 NC_005261.1 + 102184 0.66 0.860777
Target:  5'- gGCGCGgugGGCUgCGGGucGCGGGguaGGGg -3'
miRNA:   3'- aUGCGCa--UCGG-GUCCuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 103084 0.66 0.860777
Target:  5'- aUGCGCGUGcuuGCgCCGcGGggGCGGGg--- -3'
miRNA:   3'- -AUGCGCAU---CG-GGU-CCuuCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 53835 0.66 0.875838
Target:  5'- cUGCGCGagcuggAGCUCgAGGcGGCGGccGAGg -3'
miRNA:   3'- -AUGCGCa-----UCGGG-UCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 81432 0.66 0.835774
Target:  5'- cAC-CGUGGCCCGcugccGGAAGUGGGcaaccgcggcgucUGAGa -3'
miRNA:   3'- aUGcGCAUCGGGU-----CCUUCGCCU-------------ACUC- -5'
23574 5' -56.3 NC_005261.1 + 30927 0.66 0.83661
Target:  5'- cACGCGgcGgCCuGGccGCGGcgGAGu -3'
miRNA:   3'- aUGCGCauCgGGuCCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 133303 0.66 0.844867
Target:  5'- gGCGCGggcGCUCGcGGccGCGGcgGAGg -3'
miRNA:   3'- aUGCGCau-CGGGU-CCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 62494 0.67 0.79262
Target:  5'- cAgGCGgcGCaCCAGGAgcAGCGcGGUGAu -3'
miRNA:   3'- aUgCGCauCG-GGUCCU--UCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 536 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 72296 0.67 0.79262
Target:  5'- aGCGCGUGuaCCAGGccacGCGGGUGc- -3'
miRNA:   3'- aUGCGCAUcgGGUCCuu--CGCCUACuc -5'
23574 5' -56.3 NC_005261.1 + 27663 0.67 0.79262
Target:  5'- cACGUG-GGCCguGGAGcGCGGGUGuGc -3'
miRNA:   3'- aUGCGCaUCGGguCCUU-CGCCUACuC- -5'
23574 5' -56.3 NC_005261.1 + 105524 0.67 0.828162
Target:  5'- gGgGCGgggGGC--GGGggGCGGGUGGGc -3'
miRNA:   3'- aUgCGCa--UCGggUCCuuCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 26580 0.67 0.801751
Target:  5'- gGCGCGggaGGgCUGGGAGGCGGcgGcGGg -3'
miRNA:   3'- aUGCGCa--UCgGGUCCUUCGCCuaC-UC- -5'
23574 5' -56.3 NC_005261.1 + 128024 0.67 0.828162
Target:  5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3'
miRNA:   3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 138219 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.