miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 30936 0.66 0.875838
Target:  5'- gGCGC--AGCCCcucGGggGCGGGccucGAGg -3'
miRNA:   3'- aUGCGcaUCGGGu--CCuuCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 12409 0.67 0.810724
Target:  5'- cACGaCGgAGCCCuccaGggGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGGuc--CuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 33702 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 115788 1.08 0.002594
Target:  5'- gUACGCGUAGCCCAGGAAGCGGAUGAGg -3'
miRNA:   3'- -AUGCGCAUCGGGUCCUUCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 38347 0.66 0.860777
Target:  5'- gGCGCGcacGCCCAGcgggccuuuGggGCGGccGGGa -3'
miRNA:   3'- aUGCGCau-CGGGUC---------CuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 31356 0.66 0.860777
Target:  5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3'
miRNA:   3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 9606 0.66 0.860777
Target:  5'- -cCGCcucgGGCCCGGGGugggcaGGCGGGggUGGGg -3'
miRNA:   3'- auGCGca--UCGGGUCCU------UCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 14186 0.66 0.852925
Target:  5'- gGCGCGggucaGGCCCAGGGAGgaagaCGGGc--- -3'
miRNA:   3'- aUGCGCa----UCGGGUCCUUC-----GCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 28786 0.66 0.844867
Target:  5'- gGCGCGggcGCUCGcGGccGCGGcgGAGg -3'
miRNA:   3'- aUGCGCau-CGGGU-CCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 15029 0.67 0.810724
Target:  5'- gGCGgGU-GCCgGGGGcguAGCGGggGGGg -3'
miRNA:   3'- aUGCgCAuCGGgUCCU---UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 23507 0.67 0.828162
Target:  5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3'
miRNA:   3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 58289 0.66 0.844867
Target:  5'- gGC-CGgcGCgCCGGGggGCGcGggGAGg -3'
miRNA:   3'- aUGcGCauCG-GGUCCuuCGC-CuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 68575 0.66 0.875105
Target:  5'- aGCGCGUcgccgccgaggcgGGCCgCGGGA-GCGGGgccgacggcgUGGGg -3'
miRNA:   3'- aUGCGCA-------------UCGG-GUCCUuCGCCU----------ACUC- -5'
23574 5' -56.3 NC_005261.1 + 1006 0.67 0.828162
Target:  5'- gGgGCGgggGGC--GGGggGCGGGUGGGc -3'
miRNA:   3'- aUgCGCa--UCGggUCCuuCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 133544 0.66 0.869168
Target:  5'- gGCGCGcagcgcagcaugcuGCUCGGGggGCGGAcGGc -3'
miRNA:   3'- aUGCGCau------------CGGGUCCuuCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 70178 0.66 0.844867
Target:  5'- gGCGCGggagcGGCCgCuguGGAGGCGGGgguUGAa -3'
miRNA:   3'- aUGCGCa----UCGG-Gu--CCUUCGCCU---ACUc -5'
23574 5' -56.3 NC_005261.1 + 97717 0.67 0.825592
Target:  5'- gGCGgGUGGCCCGGGcGGGCuaacggcuggcaggGGcgGGGc -3'
miRNA:   3'- aUGCgCAUCGGGUCC-UUCG--------------CCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 114353 0.67 0.801751
Target:  5'- gGCGCGUGGCCgCGGccGAgucGGUGGccGAGa -3'
miRNA:   3'- aUGCGCAUCGG-GUC--CU---UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 75827 0.66 0.860777
Target:  5'- gGCGCGgccgcGCCCGGGGAGgGGc---- -3'
miRNA:   3'- aUGCGCau---CGGGUCCUUCgCCuacuc -5'
23574 5' -56.3 NC_005261.1 + 13073 0.66 0.860777
Target:  5'- gGCGCGUccgccGGCCCGucGGcGGGCGGcgGGc -3'
miRNA:   3'- aUGCGCA-----UCGGGU--CC-UUCGCCuaCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.