miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 13987 0.67 0.801751
Target:  5'- cGCGCGgcgccuGCCCGcGGcGGCGGuUGGGc -3'
miRNA:   3'- aUGCGCau----CGGGU-CCuUCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 26580 0.67 0.801751
Target:  5'- gGCGCGggaGGgCUGGGAGGCGGcgGcGGg -3'
miRNA:   3'- aUGCGCa--UCgGGUCCUUCGCCuaC-UC- -5'
23574 5' -56.3 NC_005261.1 + 624 0.67 0.79262
Target:  5'- cGCGCGUugaAGUCUAuGGgcGCgGGGUGGGg -3'
miRNA:   3'- aUGCGCA---UCGGGU-CCuuCG-CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 62494 0.67 0.79262
Target:  5'- cAgGCGgcGCaCCAGGAgcAGCGcGGUGAu -3'
miRNA:   3'- aUgCGCauCG-GGUCCU--UCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 72296 0.67 0.79262
Target:  5'- aGCGCGUGuaCCAGGccacGCGGGUGc- -3'
miRNA:   3'- aUGCGCAUcgGGUCCuu--CGCCUACuc -5'
23574 5' -56.3 NC_005261.1 + 536 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 27663 0.67 0.79262
Target:  5'- cACGUG-GGCCguGGAGcGCGGGUGuGc -3'
miRNA:   3'- aUGCGCaUCGGguCCUU-CGCCUACuC- -5'
23574 5' -56.3 NC_005261.1 + 138219 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 33702 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 127482 0.68 0.78334
Target:  5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 89767 0.68 0.78334
Target:  5'- aACGcCGUGGCCgAGGAggcccugcgggAGCGGAaggUGGa -3'
miRNA:   3'- aUGC-GCAUCGGgUCCU-----------UCGCCU---ACUc -5'
23574 5' -56.3 NC_005261.1 + 22964 0.68 0.78334
Target:  5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 137433 0.68 0.78334
Target:  5'- cGCGCGUggggggcggcGGCgCGGGggGgGGgcGGGg -3'
miRNA:   3'- aUGCGCA----------UCGgGUCCuuCgCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 31694 0.68 0.78334
Target:  5'- gACGCGgccgccGCCgAGGAGGCGGugcUGGc -3'
miRNA:   3'- aUGCGCau----CGGgUCCUUCGCCu--ACUc -5'
23574 5' -56.3 NC_005261.1 + 84087 0.68 0.77392
Target:  5'- cACGCGcauauauGCgCCAcGGggGCGgGAUGGGg -3'
miRNA:   3'- aUGCGCau-----CG-GGU-CCuuCGC-CUACUC- -5'
23574 5' -56.3 NC_005261.1 + 117761 0.68 0.77392
Target:  5'- aACGCGacucgGGUCCGGaucGggGCGGGgagGAGg -3'
miRNA:   3'- aUGCGCa----UCGGGUC---CuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 47866 0.68 0.764369
Target:  5'- --aGCGUAGCcagcggcagcguCCGGGGAGCGGcgGcGg -3'
miRNA:   3'- augCGCAUCG------------GGUCCUUCGCCuaCuC- -5'
23574 5' -56.3 NC_005261.1 + 55681 0.68 0.764369
Target:  5'- gGCGCGcGGCCgcgggcgaggaGGGggGCgaGGAUGGGg -3'
miRNA:   3'- aUGCGCaUCGGg----------UCCuuCG--CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 65097 0.68 0.764369
Target:  5'- gGCGCGagcccGGCCCGGGGAccgcGCGGAcgcGGGc -3'
miRNA:   3'- aUGCGCa----UCGGGUCCUU----CGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 122243 0.68 0.754698
Target:  5'- aGCGCGcuGCCCGGGuGAGCGGcccGGGc -3'
miRNA:   3'- aUGCGCauCGGGUCC-UUCGCCua-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.