miRNA display CGI


Results 61 - 80 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 138200 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 529 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 3413 0.72 0.769881
Target:  5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3'
miRNA:   3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 105046 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 107930 0.72 0.769881
Target:  5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3'
miRNA:   3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122489 0.72 0.769881
Target:  5'- aGGCGGUCGGccuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 54655 0.72 0.779528
Target:  5'- cUGGCGGCCGcGGgcGC-CGCGGGCa-- -3'
miRNA:   3'- -ACUGCCGGC-UCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 50640 0.72 0.779528
Target:  5'- gGGCGGCgGGGuGGCGCcgGCGAACg-- -3'
miRNA:   3'- aCUGCCGgCUCuUCGUG--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 113912 0.72 0.779528
Target:  5'- cGAUGGCCGAGGcAGCGgGCGcGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCU-UCGUgUGC-UUGaag -5'
23576 3' -52.6 NC_005261.1 + 17736 0.71 0.789035
Target:  5'- -aGCGGCgCucGGAGCGgGCGGACUUCu -3'
miRNA:   3'- acUGCCG-GcuCUUCGUgUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 39376 0.71 0.792796
Target:  5'- cGGCGGCCGGGGAGgGCGgcccuggcggcgaccCGAGCc-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGU---------------GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5844 0.71 0.798391
Target:  5'- cGGCGGCCucgGGGAacAGCGcCGCGAGCg-- -3'
miRNA:   3'- aCUGCCGG---CUCU--UCGU-GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8949 0.71 0.798391
Target:  5'- gGGCGGgCGGGGcGGCGCGgGGGCUUg -3'
miRNA:   3'- aCUGCCgGCUCU-UCGUGUgCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 123160 0.71 0.798391
Target:  5'- cGAgGGCgGGGcGGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUgCCGgCUC-UUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 37155 0.71 0.802089
Target:  5'- aGGCGGCCGcgggcguggugcuggGGcuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGC---------------UCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8357 0.71 0.806675
Target:  5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 25064 0.71 0.807587
Target:  5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3'
miRNA:   3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5'
23576 3' -52.6 NC_005261.1 + 91024 0.71 0.807587
Target:  5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 35813 0.71 0.807587
Target:  5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3'
miRNA:   3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 50851 0.71 0.807587
Target:  5'- cGACGGCCGAGGAcaucuGCcGCGCGGugggcGCUa- -3'
miRNA:   3'- aCUGCCGGCUCUU-----CG-UGUGCU-----UGAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.