miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 108446 0.66 0.971848
Target:  5'- --cCGGCCGAGcAGCGCgucgucgGCGAGgaUCu -3'
miRNA:   3'- acuGCCGGCUCuUCGUG-------UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 108385 0.67 0.941394
Target:  5'- -cGCGGCCGGcGAGCACggcgcgcagcucgGCGAGCg-- -3'
miRNA:   3'- acUGCCGGCUcUUCGUG-------------UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 107930 0.72 0.769881
Target:  5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3'
miRNA:   3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 107318 0.78 0.434008
Target:  5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 107145 0.73 0.678374
Target:  5'- gGGCGGCaUGGGGcccAGCACGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 106497 0.69 0.874326
Target:  5'- cGACGGCCGGGccauCGCGCGGccAgUUCg -3'
miRNA:   3'- aCUGCCGGCUCuuc-GUGUGCU--UgAAG- -5'
23576 3' -52.6 NC_005261.1 + 106240 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 105702 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 105464 0.66 0.964627
Target:  5'- -cACGGCCGcccucagcuccucGggGCGCGCGGGCc-- -3'
miRNA:   3'- acUGCCGGCu------------CuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 105278 0.71 0.82546
Target:  5'- gGGCGGCagcgccggCGAGcccGGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGCCG--------GCUC---UUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 105046 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 104982 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 104717 0.72 0.760102
Target:  5'- gGACGGCCGAG-GGCGCGuCGuGCcgCg -3'
miRNA:   3'- aCUGCCGGCUCuUCGUGU-GCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 104388 0.69 0.881699
Target:  5'- gGA-GGCCGAGAGGCGCGCc------ -3'
miRNA:   3'- aCUgCCGGCUCUUCGUGUGcuugaag -5'
23576 3' -52.6 NC_005261.1 + 104355 0.66 0.974897
Target:  5'- gUGACGcGCCG-GAGGCGgGCGGc---- -3'
miRNA:   3'- -ACUGC-CGGCuCUUCGUgUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 103869 0.67 0.941871
Target:  5'- cGGCGGCgGGGcGGCGCcgcCGGGCggCg -3'
miRNA:   3'- aCUGCCGgCUCuUCGUGu--GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 103504 0.67 0.950875
Target:  5'- -cGCGGCCGccaGGggGCGC-CGAccGCUg- -3'
miRNA:   3'- acUGCCGGC---UCuuCGUGuGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 103124 0.67 0.946498
Target:  5'- cGGCGGCUGGGggGCuCGCc-GCUc- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 102957 0.73 0.719881
Target:  5'- cGGCGGCCGcGGgcGC-CGCGGGCUcCg -3'
miRNA:   3'- aCUGCCGGC-UCuuCGuGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 102270 0.66 0.974897
Target:  5'- -aGCGGCCGAGcGGCcugGC-CGGGCUc- -3'
miRNA:   3'- acUGCCGGCUCuUCG---UGuGCUUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.