miRNA display CGI

Results 81 - 100 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	129206	0.7	0.529022
	Target:  5'- gCGCAGCugCuuCUGCugGugcGGCGCCu -3' miRNA:   3'- gGCGUCGugGugGAUGugC---CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	129020	0.66	0.755481
	Target:  5'- gUGCGGCugCccguaGCCUACGCGGcagaCGCCc -3' miRNA:   3'- gGCGUCGugG-----UGGAUGUGCCc---GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	128855	0.67	0.743205
	Target:  5'- aCGguGCcCCGCCUcgucgcugccgacgACgagGCGGGgGCCGg -3' miRNA:   3'- gGCguCGuGGUGGA--------------UG---UGCCCgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	128310	0.66	0.792065
	Target:  5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3' miRNA:   3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127990	0.75	0.296213
	Target:  5'- cCCGCGGCGgCGagUGCGCGGGC-CCGc -3' miRNA:   3'- -GGCGUCGUgGUggAUGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127859	0.68	0.691732
	Target:  5'- gUCGCGGCGCCAgg-GCACGagcgggagucgcgccGGCGCCc -3' miRNA:   3'- -GGCGUCGUGGUggaUGUGC---------------CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	127785	0.7	0.548457
	Target:  5'- gCUGCAGCAgCGCCUcccaGCACgcguccguGGGCACa- -3' miRNA:   3'- -GGCGUCGUgGUGGA----UGUG--------CCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	127761	0.65	0.799134
	Target:  5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA:   3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127728	0.71	0.481651
	Target:  5'- cCCGCAGCggcgGCCGCCgcaaaagccggUGCAgCGGGCcgGCCu -3' miRNA:   3'- -GGCGUCG----UGGUGG-----------AUGU-GCCCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	127697	0.66	0.774016
	Target:  5'- cCCgGCGGCGCCggaggAgCUGCGCGuGGCcuGCCu -3' miRNA:   3'- -GG-CGUCGUGG-----UgGAUGUGC-CCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	127641	0.66	0.764805
	Target:  5'- aCgGCGGCGgCGCCgggggGCGCGcGGguUCGg -3' miRNA:   3'- -GgCGUCGUgGUGGa----UGUGC-CCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127491	0.66	0.774016
	Target:  5'- aCGCuGGCgGCUGCCUGC-CGGGCGuacUCGg -3' miRNA:   3'- gGCG-UCG-UGGUGGAUGuGCCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	127329	0.68	0.637915
	Target:  5'- gCgGCGGCGCUGCCgcCGCcgccguuGGCGCCGg -3' miRNA:   3'- -GgCGUCGUGGUGGauGUGc------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127304	0.69	0.631905
	Target:  5'- cCCGcCGGCuggcgguggggcccuGCCGCC--CGCGGGgGCCGg -3' miRNA:   3'- -GGC-GUCG---------------UGGUGGauGUGCCCgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127195	0.72	0.454233
	Target:  5'- cCCG-AGUGCCGCCgggGgACGGGC-CCGg -3' miRNA:   3'- -GGCgUCGUGGUGGa--UgUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127082	0.72	0.436432
	Target:  5'- gCCGCcGCGCCGCCgcaaugACGgcUGGGCGCgGu -3' miRNA:   3'- -GGCGuCGUGGUGGa-----UGU--GCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	126933	0.73	0.393757
	Target:  5'- uCCaGCAGCGCgGCCagggGCGcCGGGCGCgGg -3' miRNA:   3'- -GG-CGUCGUGgUGGa---UGU-GCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	126747	0.69	0.577012
	Target:  5'- uCCGCguccccaGGCACCGCCaggUACAUGG-CGCCc -3' miRNA:   3'- -GGCG-------UCGUGGUGG---AUGUGCCcGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	126506	0.66	0.792065
	Target:  5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3' miRNA:   3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	126458	0.67	0.70747
	Target:  5'- gCCGCGccagcGCGCuCGCCU-CGCGGuaGUACCGc -3' miRNA:   3'- -GGCGU-----CGUG-GUGGAuGUGCC--CGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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