miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 20175 0.76 0.257946
Target:  5'- gCCGCuGCcgcgGCCGCCaGCGCGGGCgucgcgGCCGg -3'
miRNA:   3'- -GGCGuCG----UGGUGGaUGUGCCCG------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 69562 0.76 0.257946
Target:  5'- aCGCGGCGgaCGCCggcgGCGCGGGCGgCGg -3'
miRNA:   3'- gGCGUCGUg-GUGGa---UGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 2784 0.76 0.270233
Target:  5'- cCCGCAGCgcccgcGCCGCCUGgGCGGcgugcgagcGCACCu -3'
miRNA:   3'- -GGCGUCG------UGGUGGAUgUGCC---------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 50038 0.76 0.270233
Target:  5'- gCGCGGC-CCGCCU-CGCcGGCGCCGc -3'
miRNA:   3'- gGCGUCGuGGUGGAuGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 136461 0.75 0.275914
Target:  5'- gCCGCGGCGCCAacgugcgCUACACGGuggccacGCGCCu -3'
miRNA:   3'- -GGCGUCGUGGUg------GAUGUGCC-------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 88277 0.75 0.275914
Target:  5'- aCGaCGGCGCCGCCUccuuuuuugcgcgGCuccGCGGGCGCCu -3'
miRNA:   3'- gGC-GUCGUGGUGGA-------------UG---UGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 83842 0.75 0.276551
Target:  5'- aC-CGGCACgGCCUuCGCGGGCGCCc -3'
miRNA:   3'- gGcGUCGUGgUGGAuGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 84520 0.76 0.240376
Target:  5'- gCCGCAGCugGCCGCg-GCGCGcGGCGCCc -3'
miRNA:   3'- -GGCGUCG--UGGUGgaUGUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 75336 0.76 0.240376
Target:  5'- uCCGCcccGCcCCGCCUcGCGCGGGCugCGc -3'
miRNA:   3'- -GGCGu--CGuGGUGGA-UGUGCCCGugGC- -5'
23576 5' -59.1 NC_005261.1 + 69480 0.76 0.240376
Target:  5'- uCCGCGGCGCC-CCg--GCGGGCGCUu -3'
miRNA:   3'- -GGCGUCGUGGuGGaugUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 49432 0.77 0.229226
Target:  5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3'
miRNA:   3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 61170 0.77 0.229226
Target:  5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3'
miRNA:   3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 63020 0.77 0.229226
Target:  5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3'
miRNA:   3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5'
23576 5' -59.1 NC_005261.1 + 297 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 49634 0.77 0.234746
Target:  5'- aCCGUGGCGCCGCCggGC-CGGGCcUCGg -3'
miRNA:   3'- -GGCGUCGUGGUGGa-UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 137980 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 421 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 138104 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 52008 0.76 0.240376
Target:  5'- gCUGCGGCACCGgCUGCcccgguuCGGcGCGCCGa -3'
miRNA:   3'- -GGCGUCGUGGUgGAUGu------GCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 33222 0.75 0.276551
Target:  5'- aCCGCccuGGCgccccgaccGCCGCCcGCGCuGGGCGCCGg -3'
miRNA:   3'- -GGCG---UCG---------UGGUGGaUGUG-CCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.