miRNA display CGI


Results 61 - 80 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 133759 0.78 0.208237
Target:  5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 9422 0.77 0.213323
Target:  5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3'
miRNA:   3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 49634 0.77 0.234746
Target:  5'- aCCGUGGCGCCGCCggGC-CGGGCcUCGg -3'
miRNA:   3'- -GGCGUCGUGGUGGa-UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 137980 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 421 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 138104 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 52008 0.76 0.240376
Target:  5'- gCUGCGGCACCGgCUGCcccgguuCGGcGCGCCGa -3'
miRNA:   3'- -GGCGUCGUGGUgGAUGu------GCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 69480 0.76 0.240376
Target:  5'- uCCGCGGCGCC-CCg--GCGGGCGCUu -3'
miRNA:   3'- -GGCGUCGUGGuGGaugUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 75336 0.76 0.240376
Target:  5'- uCCGCcccGCcCCGCCUcGCGCGGGCugCGc -3'
miRNA:   3'- -GGCGu--CGuGGUGGA-UGUGCCCGugGC- -5'
23576 5' -59.1 NC_005261.1 + 84520 0.76 0.240376
Target:  5'- gCCGCAGCugGCCGCg-GCGCGcGGCGCCc -3'
miRNA:   3'- -GGCGUCG--UGGUGgaUGUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 297 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 63020 0.77 0.229226
Target:  5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3'
miRNA:   3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5'
23576 5' -59.1 NC_005261.1 + 39183 0.77 0.213323
Target:  5'- aCGCAGCugCAgCUcGCGCGGGUGCUGu -3'
miRNA:   3'- gGCGUCGugGUgGA-UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 58121 0.77 0.213323
Target:  5'- gCCGCGGCGCCcaagccgguACCgcgGCGCGcGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG---------UGGa--UGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 80821 0.77 0.218516
Target:  5'- cUCGCGGCGCCgGCCgcgauCACGGGCGCg- -3'
miRNA:   3'- -GGCGUCGUGG-UGGau---GUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 136789 0.77 0.223817
Target:  5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3'
miRNA:   3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 80261 0.77 0.224353
Target:  5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3'
miRNA:   3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 34721 0.77 0.229226
Target:  5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3'
miRNA:   3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 49432 0.77 0.229226
Target:  5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3'
miRNA:   3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 61170 0.77 0.229226
Target:  5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3'
miRNA:   3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.