miRNA display CGI


Results 61 - 80 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 83185 0.66 0.764805
Target:  5'- cUCGcCGGCcCCGCgcagCUGCGCGGG-GCCGg -3'
miRNA:   3'- -GGC-GUCGuGGUG----GAUGUGCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 43590 0.66 0.755481
Target:  5'- gCCGCAuguucGCGCgCGCCgACGacGGCGCCGg -3'
miRNA:   3'- -GGCGU-----CGUG-GUGGaUGUgcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 90281 0.66 0.764805
Target:  5'- gCGCAGCgugaACgCGCUcGCGCGcGGCGCgCGg -3'
miRNA:   3'- gGCGUCG----UG-GUGGaUGUGC-CCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 32183 0.66 0.764805
Target:  5'- aCGCGGCGCUAgg-GC-CGGGCAgCGc -3'
miRNA:   3'- gGCGUCGUGGUggaUGuGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 107186 0.66 0.764805
Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 20574 0.66 0.780392
Target:  5'- gCGCGGCGgggCGCUUagcgggggggcgcgGCGCGGGC-CCGg -3'
miRNA:   3'- gGCGUCGUg--GUGGA--------------UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 56109 0.66 0.764805
Target:  5'- aCCGCgccucGGaCGCCACCUuCgACGcGCACCGc -3'
miRNA:   3'- -GGCG-----UC-GUGGUGGAuG-UGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 28992 0.66 0.764805
Target:  5'- cCCGCAcuGgGCCGCgCUgcagcGCGCGGcGUGCCGc -3'
miRNA:   3'- -GGCGU--CgUGGUG-GA-----UGUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 105700 0.66 0.774016
Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3'
miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 13768 0.66 0.792065
Target:  5'- aCGUgGGCGCC-CCUGa--GGGCACCc -3'
miRNA:   3'- gGCG-UCGUGGuGGAUgugCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 7040 0.66 0.774016
Target:  5'- -gGCGGCgACCGCgc-CGCGGGCguaGCCGc -3'
miRNA:   3'- ggCGUCG-UGGUGgauGUGCCCG---UGGC- -5'
23576 5' -59.1 NC_005261.1 + 49764 0.66 0.791175
Target:  5'- gCGCGGCAcggcCCGCCcACACGcucacgcGGCGCgGc -3'
miRNA:   3'- gGCGUCGU----GGUGGaUGUGC-------CCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 14268 0.66 0.774016
Target:  5'- uUGUAGCGCuCGCgga-GCGGGCGCUGc -3'
miRNA:   3'- gGCGUCGUG-GUGgaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 4359 0.66 0.755481
Target:  5'- gCGCAG-ACCACagguagGCGCGGcagucgcgcGCGCCGg -3'
miRNA:   3'- gGCGUCgUGGUGga----UGUGCC---------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 135226 0.66 0.783105
Target:  5'- cCCGCGGgaGCC-CCgGCGcCGGGcCGCCa -3'
miRNA:   3'- -GGCGUCg-UGGuGGaUGU-GCCC-GUGGc -5'
23576 5' -59.1 NC_005261.1 + 54397 0.66 0.786705
Target:  5'- gCCGCGGC-CCGCCaGCGgaugcucgccaucuuCGGGCAg-- -3'
miRNA:   3'- -GGCGUCGuGGUGGaUGU---------------GCCCGUggc -5'
23576 5' -59.1 NC_005261.1 + 70760 0.66 0.764805
Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3'
miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 53232 0.66 0.764805
Target:  5'- cCCGCGGCcguCAUgcACugGGuGCGCCGg -3'
miRNA:   3'- -GGCGUCGug-GUGgaUGugCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 34820 0.66 0.783105
Target:  5'- gCCGCGGC-CCGCgCggaGCugGaGGCGCa- -3'
miRNA:   3'- -GGCGUCGuGGUG-Ga--UGugC-CCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 67331 0.66 0.764805
Target:  5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3'
miRNA:   3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.