miRNA display CGI

Results 61 - 80 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	26146	0.66	0.792065
	Target:  5'- aCCGC-GCACCACgugGCGCccucgccgacgaGGGCACg- -3' miRNA:   3'- -GGCGuCGUGGUGga-UGUG------------CCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	7993	0.66	0.783105
	Target:  5'- gCCGCuGGCGCggCGCCUGaGCGGGCcgacgcucuuccGCCu -3' miRNA:   3'- -GGCG-UCGUG--GUGGAUgUGCCCG------------UGGc -5'
23576	5'	-59.1	NC_005261.1	+	65374	0.66	0.764805
	Target:  5'- cCCGCGGU-CCAC--GCcUGGGCGCUGg -3' miRNA:   3'- -GGCGUCGuGGUGgaUGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	32003	0.66	0.764805
	Target:  5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3' miRNA:   3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	11428	0.66	0.774016
	Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3' miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	68726	0.66	0.755481
	Target:  5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3' miRNA:   3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	3156	0.66	0.755481
	Target:  5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3' miRNA:   3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	92830	0.66	0.774016
	Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3' miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	53232	0.66	0.764805
	Target:  5'- cCCGCGGCcguCAUgcACugGGuGCGCCGg -3' miRNA:   3'- -GGCGUCGug-GUGgaUGugCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	71826	0.66	0.780392
	Target:  5'- gCCGCGuGCGCgacgaCGCCUucuuccugaaaagaGCGaggGGGCGCCGg -3' miRNA:   3'- -GGCGU-CGUG-----GUGGA--------------UGUg--CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	19748	0.66	0.770346
	Target:  5'- uCCGCAGCGCCGCaUACcggcagaucuuguaAUGGcaagugucuucuaGCGCCGc -3' miRNA:   3'- -GGCGUCGUGGUGgAUG--------------UGCC-------------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	8287	0.66	0.792065
	Target:  5'- gCUGCAgauGUACCACUcgg-UGGGCGCCGu -3' miRNA:   3'- -GGCGU---CGUGGUGGauguGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	106833	0.66	0.792065
	Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	92962	0.66	0.792065
	Target:  5'- aCgGCAGCACgGCg---GCGGGCACgGu -3' miRNA:   3'- -GgCGUCGUGgUGgaugUGCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	93512	0.66	0.792065
	Target:  5'- gCUGCAGCGC--CCUGCGCGcGUcaGCCGu -3' miRNA:   3'- -GGCGUCGUGguGGAUGUGCcCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	86262	0.66	0.762019
	Target:  5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3' miRNA:   3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	88044	0.66	0.755481
	Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3' miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	49764	0.66	0.791175
	Target:  5'- gCGCGGCAcggcCCGCCcACACGcucacgcGGCGCgGc -3' miRNA:   3'- gGCGUCGU----GGUGGaUGUGC-------CCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	84086	0.66	0.783105
	Target:  5'- cCCGC-GCACgGCCgcgUGCGGcGUGCCGu -3' miRNA:   3'- -GGCGuCGUGgUGGau-GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	13882	0.66	0.755481
	Target:  5'- gCGCAGCaauGCCGCCcAC-UGaGGCGCUGc -3' miRNA:   3'- gGCGUCG---UGGUGGaUGuGC-CCGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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