miRNA display CGI

Results 41 - 60 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	48155	0.66	0.755481
	Target:  5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3' miRNA:   3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	6591	0.66	0.774016
	Target:  5'- cCCGgGGgGCCcgucgguCCUcGCgGCGGGCGCCa -3' miRNA:   3'- -GGCgUCgUGGu------GGA-UG-UGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	117946	0.66	0.752663
	Target:  5'- gCCGCAagcGCGCCcCCgcgACACGacccggcgguucucGGCGCCc -3' miRNA:   3'- -GGCGU---CGUGGuGGa--UGUGC--------------CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	105700	0.66	0.774016
	Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3' miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	64116	0.66	0.764805
	Target:  5'- gCGcCAGgACCACCggguC-CGGGC-CCGg -3' miRNA:   3'- gGC-GUCgUGGUGGau--GuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	13321	0.66	0.764805
	Target:  5'- uCCGCGGCuucCCGCgUggcgGCGgGGGCGgCCa -3' miRNA:   3'- -GGCGUCGu--GGUGgA----UGUgCCCGU-GGc -5'
23576	5'	-59.1	NC_005261.1	+	22702	0.66	0.768503
	Target:  5'- gCCGCcgauGCugCGCUcggugcagcagguggUGCGgGGGCugCGg -3' miRNA:   3'- -GGCGu---CGugGUGG---------------AUGUgCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	39219	0.66	0.764805
	Target:  5'- gCCGCcGCGCCGCCgcuCGCGa-CGCUGa -3' miRNA:   3'- -GGCGuCGUGGUGGau-GUGCccGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	11428	0.66	0.774016
	Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3' miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	67980	0.66	0.774016
	Target:  5'- aUCGCGGacaaGCgCGCCgaggucgaguuUGCGCGcGGCGCCa -3' miRNA:   3'- -GGCGUCg---UG-GUGG-----------AUGUGC-CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	81416	0.66	0.764805
	Target:  5'- gCCGCGGCACCAggaACAcCGuGGC-CCGc -3' miRNA:   3'- -GGCGUCGUGGUggaUGU-GC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7040	0.66	0.774016
	Target:  5'- -gGCGGCgACCGCgc-CGCGGGCguaGCCGc -3' miRNA:   3'- ggCGUCG-UGGUGgauGUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	133319	0.66	0.783105
	Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	38106	0.66	0.774016
	Target:  5'- gCgGgGGCugCgGCCgguGCGGGCGCCGc -3' miRNA:   3'- -GgCgUCGugG-UGGaugUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	86262	0.66	0.762019
	Target:  5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3' miRNA:   3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	68726	0.66	0.755481
	Target:  5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3' miRNA:   3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	18143	0.66	0.783105
	Target:  5'- gCGCGcGUGCCgaGCCUcCACGGGguaGCCGu -3' miRNA:   3'- gGCGU-CGUGG--UGGAuGUGCCCg--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135226	0.66	0.783105
	Target:  5'- cCCGCGGgaGCC-CCgGCGcCGGGcCGCCa -3' miRNA:   3'- -GGCGUCg-UGGuGGaUGU-GCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	11216	0.66	0.774016
	Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3' miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576	5'	-59.1	NC_005261.1	+	67331	0.66	0.764805
	Target:  5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3' miRNA:   3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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