miRNA display CGI

Results 41 - 60 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	84086	0.66	0.783105
	Target:  5'- cCCGC-GCACgGCCgcgUGCGGcGUGCCGu -3' miRNA:   3'- -GGCGuCGUGgUGGau-GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	11428	0.66	0.774016
	Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3' miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	65374	0.66	0.764805
	Target:  5'- cCCGCGGU-CCAC--GCcUGGGCGCUGg -3' miRNA:   3'- -GGCGUCGuGGUGgaUGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	3156	0.66	0.755481
	Target:  5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3' miRNA:   3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	20574	0.66	0.780392
	Target:  5'- gCGCGGCGgggCGCUUagcgggggggcgcgGCGCGGGC-CCGg -3' miRNA:   3'- gGCGUCGUg--GUGGA--------------UGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	43590	0.66	0.755481
	Target:  5'- gCCGCAuguucGCGCgCGCCgACGacGGCGCCGg -3' miRNA:   3'- -GGCGU-----CGUG-GUGGaUGUgcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	91302	0.66	0.755481
	Target:  5'- gCCGCgugAGCACCauccuggacaGCCccgcgugcgUGCGCGGGCuCUGg -3' miRNA:   3'- -GGCG---UCGUGG----------UGG---------AUGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	60191	0.66	0.774016
	Target:  5'- cCCGCG--ACCACCgGCugGGGCGg-- -3' miRNA:   3'- -GGCGUcgUGGUGGaUGugCCCGUggc -5'
23576	5'	-59.1	NC_005261.1	+	32183	0.66	0.764805
	Target:  5'- aCGCGGCGCUAgg-GC-CGGGCAgCGc -3' miRNA:   3'- gGCGUCGUGGUggaUGuGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	80462	0.66	0.785807
	Target:  5'- gCCGCGgacugcuuccagaucGCGCCGggcguguggugguCCUACGCGGaccgGCGCCu -3' miRNA:   3'- -GGCGU---------------CGUGGU-------------GGAUGUGCC----CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	135396	0.66	0.774016
	Target:  5'- gCCGcCGGCccuGCCGCCcgagcucggGCugGGGCcgcCCGg -3' miRNA:   3'- -GGC-GUCG---UGGUGGa--------UGugCCCGu--GGC- -5'
23576	5'	-59.1	NC_005261.1	+	67980	0.66	0.774016
	Target:  5'- aUCGCGGacaaGCgCGCCgaggucgaguuUGCGCGcGGCGCCa -3' miRNA:   3'- -GGCGUCg---UG-GUGG-----------AUGUGC-CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	92830	0.66	0.774016
	Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3' miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	19810	0.66	0.764805
	Target:  5'- uCCGCGGCGgCgacaGCCaGCGCGgcugcGGCGCCc -3' miRNA:   3'- -GGCGUCGUgG----UGGaUGUGC-----CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	11216	0.66	0.774016
	Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3' miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576	5'	-59.1	NC_005261.1	+	83185	0.66	0.764805
	Target:  5'- cUCGcCGGCcCCGCgcagCUGCGCGGG-GCCGg -3' miRNA:   3'- -GGC-GUCGuGGUG----GAUGUGCCCgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	90281	0.66	0.764805
	Target:  5'- gCGCAGCgugaACgCGCUcGCGCGcGGCGCgCGg -3' miRNA:   3'- gGCGUCG----UG-GUGGaUGUGC-CCGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	32003	0.66	0.764805
	Target:  5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3' miRNA:   3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	88044	0.66	0.755481
	Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3' miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	22702	0.66	0.768503
	Target:  5'- gCCGCcgauGCugCGCUcggugcagcagguggUGCGgGGGCugCGg -3' miRNA:   3'- -GGCGu---CGugGUGG---------------AUGUgCCCGugGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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