miRNA display CGI


Results 41 - 60 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 79244 0.78 0.1955
Target:  5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3'
miRNA:   3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 119880 0.78 0.197895
Target:  5'- gCCGCAGCcgagggcguguacACCuggcGCCgcgACGCGGGCGCCa -3'
miRNA:   3'- -GGCGUCG-------------UGG----UGGa--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 46522 0.78 0.203255
Target:  5'- gCGCAGCACCGCCUcCGCuGcGCGCUGg -3'
miRNA:   3'- gGCGUCGUGGUGGAuGUGcC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 29242 0.78 0.208237
Target:  5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 15782 0.78 0.193602
Target:  5'- gCCGCuggcgGGCGCCGCCcGCGCGGccaGCGCCGc -3'
miRNA:   3'- -GGCG-----UCGUGGUGGaUGUGCC---CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 56421 0.77 0.234189
Target:  5'- uUCGCGGCGcacCCGCCUGCggaggcgGCGGcGCACCGc -3'
miRNA:   3'- -GGCGUCGU---GGUGGAUG-------UGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 33463 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 135436 0.77 0.234746
Target:  5'- cUCGCA-CGCCGCCcaggcgGCGCGGGCGCUGc -3'
miRNA:   3'- -GGCGUcGUGGUGGa-----UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 297 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 61170 0.77 0.229226
Target:  5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3'
miRNA:   3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 63020 0.77 0.229226
Target:  5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3'
miRNA:   3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5'
23576 5' -59.1 NC_005261.1 + 33587 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 34721 0.77 0.229226
Target:  5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3'
miRNA:   3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 58121 0.77 0.213323
Target:  5'- gCCGCGGCGCCcaagccgguACCgcgGCGCGcGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG---------UGGa--UGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 49432 0.77 0.229226
Target:  5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3'
miRNA:   3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 136789 0.77 0.223817
Target:  5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3'
miRNA:   3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 80261 0.77 0.224353
Target:  5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3'
miRNA:   3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 29196 0.77 0.223817
Target:  5'- gCCGCGGCGCC-C--GCGCGGGCGCgCGa -3'
miRNA:   3'- -GGCGUCGUGGuGgaUGUGCCCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 51294 0.77 0.223817
Target:  5'- gCCGCGGcCACCuACCUcgcGCACGccGGCGCCGc -3'
miRNA:   3'- -GGCGUC-GUGG-UGGA---UGUGC--CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 123221 0.77 0.223282
Target:  5'- gCGCGGCcuGCCGCCUagcggccgcccagGCGCGGGCcCCGc -3'
miRNA:   3'- gGCGUCG--UGGUGGA-------------UGUGCCCGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.