miRNA display CGI

Results 41 - 60 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	68710	0.78	0.193602
	Target:  5'- aCgGCGGCGCCGgcCCUcacGCgGCGGGCGCCGg -3' miRNA:   3'- -GgCGUCGUGGU--GGA---UG-UGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	29242	0.78	0.208237
	Target:  5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3' miRNA:   3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	46522	0.78	0.203255
	Target:  5'- gCGCAGCACCGCCUcCGCuGcGCGCUGg -3' miRNA:   3'- gGCGUCGUGGUGGAuGUGcC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	119880	0.78	0.197895
	Target:  5'- gCCGCAGCcgagggcguguacACCuggcGCCgcgACGCGGGCGCCa -3' miRNA:   3'- -GGCGUCG-------------UGG----UGGa--UGUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	41546	0.78	0.188928
	Target:  5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3' miRNA:   3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	56421	0.77	0.234189
	Target:  5'- uUCGCGGCGcacCCGCCUGCggaggcgGCGGcGCACCGc -3' miRNA:   3'- -GGCGUCGU---GGUGGAUG-------UGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	33587	0.77	0.234746
	Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3' miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	135436	0.77	0.234746
	Target:  5'- cUCGCA-CGCCGCCcaggcgGCGCGGGCGCUGc -3' miRNA:   3'- -GGCGUcGUGGUGGa-----UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	33463	0.77	0.234746
	Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	80821	0.77	0.218516
	Target:  5'- cUCGCGGCGCCgGCCgcgauCACGGGCGCg- -3' miRNA:   3'- -GGCGUCGUGG-UGGau---GUGCCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	9422	0.77	0.213323
	Target:  5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3' miRNA:   3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	58121	0.77	0.213323
	Target:  5'- gCCGCGGCGCCcaagccgguACCgcgGCGCGcGCGCCGg -3' miRNA:   3'- -GGCGUCGUGG---------UGGa--UGUGCcCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	63020	0.77	0.229226
	Target:  5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3' miRNA:   3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	136789	0.77	0.223817
	Target:  5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3' miRNA:   3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	80261	0.77	0.224353
	Target:  5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3' miRNA:   3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	123221	0.77	0.223282
	Target:  5'- gCGCGGCcuGCCGCCUagcggccgcccagGCGCGGGCcCCGc -3' miRNA:   3'- gGCGUCG--UGGUGGA-------------UGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	34721	0.77	0.229226
	Target:  5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3' miRNA:   3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	49432	0.77	0.229226
	Target:  5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3' miRNA:   3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	51294	0.77	0.223817
	Target:  5'- gCCGCGGcCACCuACCUcgcGCACGccGGCGCCGc -3' miRNA:   3'- -GGCGUC-GUGG-UGGA---UGUGC--CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	29196	0.77	0.223817
	Target:  5'- gCCGCGGCGCC-C--GCGCGGGCGCgCGa -3' miRNA:   3'- -GGCGUCGUGGuGgaUGUGCCCGUG-GC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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