Results 41 - 60 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 75718 | 0.78 | 0.198377 |
Target: 5'- gCGCGGCGCCuuCCUgcagaACACGGGC-CCGu -3' miRNA: 3'- gGCGUCGUGGu-GGA-----UGUGCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 64865 | 0.78 | 0.203255 |
Target: 5'- gCCGCgugcuGGCGCCGCCUGaGCcGGCGCCGg -3' miRNA: 3'- -GGCG-----UCGUGGUGGAUgUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 46522 | 0.78 | 0.203255 |
Target: 5'- gCGCAGCACCGCCUcCGCuGcGCGCUGg -3' miRNA: 3'- gGCGUCGUGGUGGAuGUGcC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 29242 | 0.78 | 0.208237 |
Target: 5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3' miRNA: 3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 133759 | 0.78 | 0.208237 |
Target: 5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3' miRNA: 3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 58121 | 0.77 | 0.213323 |
Target: 5'- gCCGCGGCGCCcaagccgguACCgcgGCGCGcGCGCCGg -3' miRNA: 3'- -GGCGUCGUGG---------UGGa--UGUGCcCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 39183 | 0.77 | 0.213323 |
Target: 5'- aCGCAGCugCAgCUcGCGCGGGUGCUGu -3' miRNA: 3'- gGCGUCGugGUgGA-UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 9422 | 0.77 | 0.213323 |
Target: 5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3' miRNA: 3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 80821 | 0.77 | 0.218516 |
Target: 5'- cUCGCGGCGCCgGCCgcgauCACGGGCGCg- -3' miRNA: 3'- -GGCGUCGUGG-UGGau---GUGCCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 123221 | 0.77 | 0.223282 |
Target: 5'- gCGCGGCcuGCCGCCUagcggccgcccagGCGCGGGCcCCGc -3' miRNA: 3'- gGCGUCG--UGGUGGA-------------UGUGCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 29196 | 0.77 | 0.223817 |
Target: 5'- gCCGCGGCGCC-C--GCGCGGGCGCgCGa -3' miRNA: 3'- -GGCGUCGUGGuGgaUGUGCCCGUG-GC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 51294 | 0.77 | 0.223817 |
Target: 5'- gCCGCGGcCACCuACCUcgcGCACGccGGCGCCGc -3' miRNA: 3'- -GGCGUC-GUGG-UGGA---UGUGC--CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 32272 | 0.77 | 0.223817 |
Target: 5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3' miRNA: 3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 136789 | 0.77 | 0.223817 |
Target: 5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3' miRNA: 3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 80261 | 0.77 | 0.224353 |
Target: 5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3' miRNA: 3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 63020 | 0.77 | 0.229226 |
Target: 5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3' miRNA: 3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 49432 | 0.77 | 0.229226 |
Target: 5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3' miRNA: 3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 34721 | 0.77 | 0.229226 |
Target: 5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3' miRNA: 3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 61170 | 0.77 | 0.229226 |
Target: 5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3' miRNA: 3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 65672 | 0.77 | 0.229226 |
Target: 5'- gCGCAGCGCCGCCaGCAcCGGGU-CCa -3' miRNA: 3'- gGCGUCGUGGUGGaUGU-GCCCGuGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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