miRNA display CGI

Results 41 - 60 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	136647	0.66	0.792065
	Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	32129	0.66	0.792065
	Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	106833	0.66	0.792065
	Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	73447	0.66	0.792065
	Target:  5'- gCGCuGCGCCGCacguCGUGGcGCGCCGc -3' miRNA:   3'- gGCGuCGUGGUGgau-GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	91436	0.66	0.791175
	Target:  5'- gCCGCGGUgaaCGCgCUGCGCGGcacggccccgcccGCGCCu -3' miRNA:   3'- -GGCGUCGug-GUG-GAUGUGCC-------------CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	49764	0.66	0.791175
	Target:  5'- gCGCGGCAcggcCCGCCcACACGcucacgcGGCGCgGc -3' miRNA:   3'- gGCGUCGU----GGUGGaUGUGC-------CCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	66565	0.66	0.789391
	Target:  5'- gCCGCgcucgaacgaguccAGCACCGUCUGCACGuuGCGCgCGa -3' miRNA:   3'- -GGCG--------------UCGUGGUGGAUGUGCc-CGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	98254	0.66	0.786705
	Target:  5'- gCCgGCGGCGCgcgcaacccgcugaGCCUGCGCgaGGGCuCCGu -3' miRNA:   3'- -GG-CGUCGUGg-------------UGGAUGUG--CCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	54397	0.66	0.786705
	Target:  5'- gCCGCGGC-CCGCCaGCGgaugcucgccaucuuCGGGCAg-- -3' miRNA:   3'- -GGCGUCGuGGUGGaUGU---------------GCCCGUggc -5'
23576	5'	-59.1	NC_005261.1	+	80462	0.66	0.785807
	Target:  5'- gCCGCGgacugcuuccagaucGCGCCGggcguguggugguCCUACGCGGaccgGCGCCu -3' miRNA:   3'- -GGCGU---------------CGUGGU-------------GGAUGUGCC----CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	118492	0.66	0.783105
	Target:  5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3' miRNA:   3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135226	0.66	0.783105
	Target:  5'- cCCGCGGgaGCC-CCgGCGcCGGGcCGCCa -3' miRNA:   3'- -GGCGUCg-UGGuGGaUGU-GCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	34820	0.66	0.783105
	Target:  5'- gCCGCGGC-CCGCgCggaGCugGaGGCGCa- -3' miRNA:   3'- -GGCGUCGuGGUG-Ga--UGugC-CCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	84086	0.66	0.783105
	Target:  5'- cCCGC-GCACgGCCgcgUGCGGcGUGCCGu -3' miRNA:   3'- -GGCGuCGUGgUGGau-GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	30709	0.66	0.783105
	Target:  5'- cCCGCGGgaGCC-CCgGCGcCGGGcCGCCa -3' miRNA:   3'- -GGCGUCg-UGGuGGaUGU-GCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	18143	0.66	0.783105
	Target:  5'- gCGCGcGUGCCgaGCCUcCACGGGguaGCCGu -3' miRNA:   3'- gGCGU-CGUGG--UGGAuGUGCCCg--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	28802	0.66	0.783105
	Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7993	0.66	0.783105
	Target:  5'- gCCGCuGGCGCggCGCCUGaGCGGGCcgacgcucuuccGCCu -3' miRNA:   3'- -GGCG-UCGUG--GUGGAUgUGCCCG------------UGGc -5'
23576	5'	-59.1	NC_005261.1	+	125660	0.66	0.783105
	Target:  5'- cCCaGCAGCgcgucauacguGCCGCCga-AUGGGUuuGCCGg -3' miRNA:   3'- -GG-CGUCG-----------UGGUGGaugUGCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	133319	0.66	0.783105
	Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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