miRNA display CGI

Results 61 - 80 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	84086	0.66	0.783105
	Target:  5'- cCCGC-GCACgGCCgcgUGCGGcGUGCCGu -3' miRNA:   3'- -GGCGuCGUGgUGGau-GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	125660	0.66	0.783105
	Target:  5'- cCCaGCAGCgcgucauacguGCCGCCga-AUGGGUuuGCCGg -3' miRNA:   3'- -GG-CGUCG-----------UGGUGGaugUGCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	133319	0.66	0.783105
	Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	118492	0.66	0.783105
	Target:  5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3' miRNA:   3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	28802	0.66	0.783105
	Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	91072	0.66	0.782202
	Target:  5'- cCCGCuGGUggucucgGCCGCCgACGCcGGCGCUGu -3' miRNA:   3'- -GGCG-UCG-------UGGUGGaUGUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	89562	0.66	0.782202
	Target:  5'- cCCGUAGuCGCCguuGCCgcgcgGCucuccggGCGGGgGCCGg -3' miRNA:   3'- -GGCGUC-GUGG---UGGa----UG-------UGCCCgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	71826	0.66	0.780392
	Target:  5'- gCCGCGuGCGCgacgaCGCCUucuuccugaaaagaGCGaggGGGCGCCGg -3' miRNA:   3'- -GGCGU-CGUG-----GUGGA--------------UGUg--CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	105457	0.66	0.780392
	Target:  5'- gCGCGGacacgGCCGcCCUcagcuccucggggcGCGCGGGCcCCGa -3' miRNA:   3'- gGCGUCg----UGGU-GGA--------------UGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	20574	0.66	0.780392
	Target:  5'- gCGCGGCGgggCGCUUagcgggggggcgcgGCGCGGGC-CCGg -3' miRNA:   3'- gGCGUCGUg--GUGGA--------------UGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	58898	0.66	0.777667
	Target:  5'- aCCGCguggucaagacggacGGCaacaugGCCAUCaUGCGCGGGCucGCCa -3' miRNA:   3'- -GGCG---------------UCG------UGGUGG-AUGUGCCCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	76581	0.66	0.774016
	Target:  5'- gCCGCucGGCucaguCCGCCgGCggACGGGCGgCCa -3' miRNA:   3'- -GGCG--UCGu----GGUGGaUG--UGCCCGU-GGc -5'
23576	5'	-59.1	NC_005261.1	+	11216	0.66	0.774016
	Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3' miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576	5'	-59.1	NC_005261.1	+	11428	0.66	0.774016
	Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3' miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	60191	0.66	0.774016
	Target:  5'- cCCGCG--ACCACCgGCugGGGCGg-- -3' miRNA:   3'- -GGCGUcgUGGUGGaUGugCCCGUggc -5'
23576	5'	-59.1	NC_005261.1	+	7040	0.66	0.774016
	Target:  5'- -gGCGGCgACCGCgc-CGCGGGCguaGCCGc -3' miRNA:   3'- ggCGUCG-UGGUGgauGUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	38106	0.66	0.774016
	Target:  5'- gCgGgGGCugCgGCCgguGCGGGCGCCGc -3' miRNA:   3'- -GgCgUCGugG-UGGaugUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	67980	0.66	0.774016
	Target:  5'- aUCGCGGacaaGCgCGCCgaggucgaguuUGCGCGcGGCGCCa -3' miRNA:   3'- -GGCGUCg---UG-GUGG-----------AUGUGC-CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	105700	0.66	0.774016
	Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3' miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	30211	0.66	0.774016
	Target:  5'- aCGCGGacguGCUGCCgcUGCugGGGCugCc -3' miRNA:   3'- gGCGUCg---UGGUGG--AUGugCCCGugGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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