miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 30879 0.66 0.774016
Target:  5'- gCCGcCGGCccuGCCGCCcgagcucggGCugGGGCcgcCCGg -3'
miRNA:   3'- -GGC-GUCG---UGGUGGa--------UGugCCCGu--GGC- -5'
23576 5' -59.1 NC_005261.1 + 61139 0.66 0.774016
Target:  5'- gCGCaAGuCAUgGCCgUGCACcGGCGCCGc -3'
miRNA:   3'- gGCG-UC-GUGgUGG-AUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 11428 0.66 0.774016
Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3'
miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 71777 0.66 0.774016
Target:  5'- aCCGCGGC-CCGCUcGCagcugaGCGcGGC-CCGg -3'
miRNA:   3'- -GGCGUCGuGGUGGaUG------UGC-CCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 94469 0.66 0.774016
Target:  5'- uCCGCgucGGCGucgucCCGCggGC-CGGGCACCu -3'
miRNA:   3'- -GGCG---UCGU-----GGUGgaUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 11216 0.66 0.774016
Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3'
miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576 5' -59.1 NC_005261.1 + 38106 0.66 0.774016
Target:  5'- gCgGgGGCugCgGCCgguGCGGGCGCCGc -3'
miRNA:   3'- -GgCgUCGugG-UGGaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 14268 0.66 0.774016
Target:  5'- uUGUAGCGCuCGCgga-GCGGGCGCUGc -3'
miRNA:   3'- gGCGUCGUG-GUGgaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 127491 0.66 0.774016
Target:  5'- aCGCuGGCgGCUGCCUGC-CGGGCGuacUCGg -3'
miRNA:   3'- gGCG-UCG-UGGUGGAUGuGCCCGU---GGC- -5'
23576 5' -59.1 NC_005261.1 + 106341 0.66 0.774016
Target:  5'- gCCGCGcGUaaGCgGCCUcgGCGCGcgcgaaGGCGCCGg -3'
miRNA:   3'- -GGCGU-CG--UGgUGGA--UGUGC------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 15477 0.66 0.774016
Target:  5'- aCCGCGGCggacacgcGCCGCUcGCuGCGGGCGg-- -3'
miRNA:   3'- -GGCGUCG--------UGGUGGaUG-UGCCCGUggc -5'
23576 5' -59.1 NC_005261.1 + 68138 0.66 0.774016
Target:  5'- gCGCGGCgaccgcgccgugGCCGgCUACACGcGCGCgGa -3'
miRNA:   3'- gGCGUCG------------UGGUgGAUGUGCcCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 67980 0.66 0.774016
Target:  5'- aUCGCGGacaaGCgCGCCgaggucgaguuUGCGCGcGGCGCCa -3'
miRNA:   3'- -GGCGUCg---UG-GUGG-----------AUGUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 109239 0.66 0.774016
Target:  5'- gCUGCAGCGCgGCCcagUGCGGG-GCCa -3'
miRNA:   3'- -GGCGUCGUGgUGGau-GUGCCCgUGGc -5'
23576 5' -59.1 NC_005261.1 + 60191 0.66 0.774016
Target:  5'- cCCGCG--ACCACCgGCugGGGCGg-- -3'
miRNA:   3'- -GGCGUcgUGGUGGaUGugCCCGUggc -5'
23576 5' -59.1 NC_005261.1 + 76581 0.66 0.774016
Target:  5'- gCCGCucGGCucaguCCGCCgGCggACGGGCGgCCa -3'
miRNA:   3'- -GGCG--UCGu----GGUGGaUG--UGCCCGU-GGc -5'
23576 5' -59.1 NC_005261.1 + 135396 0.66 0.774016
Target:  5'- gCCGcCGGCccuGCCGCCcgagcucggGCugGGGCcgcCCGg -3'
miRNA:   3'- -GGC-GUCG---UGGUGGa--------UGugCCCGu--GGC- -5'
23576 5' -59.1 NC_005261.1 + 105700 0.66 0.774016
Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3'
miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 15919 0.66 0.774016
Target:  5'- gCGCAGCcgggGCCgggGCCgggGCcCGGGCaggaGCCGg -3'
miRNA:   3'- gGCGUCG----UGG---UGGa--UGuGCCCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 7040 0.66 0.774016
Target:  5'- -gGCGGCgACCGCgc-CGCGGGCguaGCCGc -3'
miRNA:   3'- ggCGUCG-UGGUGgauGUGCCCG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.