miRNA display CGI

Results 61 - 80 of 1223 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	5505	0.75	0.289541
	Target:  5'- gUGCGGgGCCGCCgGCAaugagguaGGGCGCCGg -3' miRNA:   3'- gGCGUCgUGGUGGaUGUg-------CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	5510	0.69	0.606883
	Target:  5'- gCCGCGGCagcggcggcgagGCCGCCggcuucgGCGCgcagcgagacgggGGGCGCCc -3' miRNA:   3'- -GGCGUCG------------UGGUGGa------UGUG-------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	5588	0.67	0.717229
	Target:  5'- gCCGCuAGgGCCGCCgcgccCGCGuccucGGCGCCa -3' miRNA:   3'- -GGCG-UCgUGGUGGau---GUGC-----CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	5859	0.69	0.578004
	Target:  5'- --aCAGCGCCGCgaGCGCGGcgagcGCGCCGc -3' miRNA:   3'- ggcGUCGUGGUGgaUGUGCC-----CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	6010	0.7	0.519399
	Target:  5'- aCGUAGUACUGCUcgcgugGCGCGGGCGggcCCGg -3' miRNA:   3'- gGCGUCGUGGUGGa-----UGUGCCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	6063	0.71	0.500368
	Target:  5'- cCCGCccGCGCUGCCUGCagcgGCGGcGCGCuCGa -3' miRNA:   3'- -GGCGu-CGUGGUGGAUG----UGCC-CGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	6270	0.81	0.120382
	Target:  5'- gCGCGGCAgcuCCACCcgguagacggGCGCGGGCACCGc -3' miRNA:   3'- gGCGUCGU---GGUGGa---------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	6334	0.66	0.792065
	Target:  5'- gCCGC-GUACCcCCUGCccacCGGccucGCGCCGg -3' miRNA:   3'- -GGCGuCGUGGuGGAUGu---GCC----CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	6383	0.69	0.578004
	Target:  5'- gCCGCuuGGaCACC-CCgcaGCagGCGGGCGCCGc -3' miRNA:   3'- -GGCG--UC-GUGGuGGa--UG--UGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	6591	0.66	0.774016
	Target:  5'- cCCGgGGgGCCcgucgguCCUcGCgGCGGGCGCCa -3' miRNA:   3'- -GGCgUCgUGGu------GGA-UG-UGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	6787	0.68	0.687778
	Target:  5'- cCCGCgaGGCGCgGCgCaAgGgGGGCGCCGg -3' miRNA:   3'- -GGCG--UCGUGgUG-GaUgUgCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7013	0.75	0.303004
	Target:  5'- gCGC-GCgGCCACgUACGCGGGCgcGCCGg -3' miRNA:   3'- gGCGuCG-UGGUGgAUGUGCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7040	0.66	0.774016
	Target:  5'- -gGCGGCgACCGCgc-CGCGGGCguaGCCGc -3' miRNA:   3'- ggCGUCG-UGGUGgauGUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7373	0.72	0.454233
	Target:  5'- gCCGCGGCGCCcgGCCggGCGCGcGCGCa- -3' miRNA:   3'- -GGCGUCGUGG--UGGa-UGUGCcCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	7446	0.8	0.154993
	Target:  5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3' miRNA:   3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	7551	0.69	0.607882
	Target:  5'- -aGCAGCACgCGCgCggGCAgGGGCucGCCGa -3' miRNA:   3'- ggCGUCGUG-GUG-Ga-UGUgCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7660	0.66	0.792065
	Target:  5'- gCGCGGCGgCGCUUccGCccgGCGGGcCGCCc -3' miRNA:   3'- gGCGUCGUgGUGGA--UG---UGCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	7888	0.69	0.607882
	Target:  5'- cCCGCAGCGCguCCccgaGCGCGGccGgGCCGu -3' miRNA:   3'- -GGCGUCGUGguGGa---UGUGCC--CgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7904	0.73	0.393757
	Target:  5'- gCGCGGCGCCACCa--GauGGCGCCu -3' miRNA:   3'- gGCGUCGUGGUGGaugUgcCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	7993	0.66	0.783105
	Target:  5'- gCCGCuGGCGCggCGCCUGaGCGGGCcgacgcucuuccGCCu -3' miRNA:   3'- -GGCG-UCGUG--GUGGAUgUGCCCG------------UGGc -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home