miRNA display CGI

Results 41 - 60 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	3686	0.68	0.657928
	Target:  5'- gCCGCGGC-CCGCUgcaGC-CGaGaGCACCGg -3' miRNA:   3'- -GGCGUCGuGGUGGa--UGuGC-C-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	3814	0.74	0.324094
	Target:  5'- gCCGCucgcGCGCUGCCgcggGCcCGGGCGCUGg -3' miRNA:   3'- -GGCGu---CGUGGUGGa---UGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	3866	0.72	0.41904
	Target:  5'- gCCaGCGGCGCCGCCccccGCGCGgcGGCGCgGg -3' miRNA:   3'- -GG-CGUCGUGGUGGa---UGUGC--CCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	3887	0.71	0.46328
	Target:  5'- gCGCAGCucgGCgAgCgcgGCGCGGGCGCCc -3' miRNA:   3'- gGCGUCG---UGgUgGa--UGUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	3920	0.67	0.736529
	Target:  5'- gCCGcCGGCGCCgGCCU-C-CGGGUagGCCa -3' miRNA:   3'- -GGC-GUCGUGG-UGGAuGuGCCCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	3985	0.7	0.548457
	Target:  5'- aCGCGGC-CCGCaggGCGCGuGCGCCa -3' miRNA:   3'- gGCGUCGuGGUGga-UGUGCcCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	4152	0.69	0.578004
	Target:  5'- gCUGCAGCaggcgcGCCAgCUGCAggucCGGGC-CCGc -3' miRNA:   3'- -GGCGUCG------UGGUgGAUGU----GCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4304	0.7	0.538709
	Target:  5'- cCCGCGGcCGCCGCgUaGCGCGcGGcCGCCu -3' miRNA:   3'- -GGCGUC-GUGGUGgA-UGUGC-CC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	4359	0.66	0.755481
	Target:  5'- gCGCAG-ACCACagguagGCGCGGcagucgcgcGCGCCGg -3' miRNA:   3'- gGCGUCgUGGUGga----UGUGCC---------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4404	0.68	0.677861
	Target:  5'- gCgGCGGCGgCGCgCUGC-CGGGCcaggccucGCCGg -3' miRNA:   3'- -GgCGUCGUgGUG-GAUGuGCCCG--------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4480	0.83	0.093073
	Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3' miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576	5'	-59.1	NC_005261.1	+	4522	0.75	0.276551
	Target:  5'- cCCGCgcgGGCGCCGCg-GCGaGGGCGCCGg -3' miRNA:   3'- -GGCG---UCGUGGUGgaUGUgCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4601	0.67	0.69765
	Target:  5'- -aGCGGCGCgGCgaGCGCGGcccacaGCGCCa -3' miRNA:   3'- ggCGUCGUGgUGgaUGUGCC------CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	4868	0.71	0.481651
	Target:  5'- gCGCAGgcaGCCGaagcCCUGCGCGGcaGCGCCGc -3' miRNA:   3'- gGCGUCg--UGGU----GGAUGUGCC--CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4929	0.71	0.485368
	Target:  5'- -aGCAGCcagucguccuuggcgGCCACg-AgGCGGGCGCCGg -3' miRNA:   3'- ggCGUCG---------------UGGUGgaUgUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4934	0.67	0.746053
	Target:  5'- gCCGCgAGCGCCcgcGCCgcgGCcCaGGCGCCc -3' miRNA:   3'- -GGCG-UCGUGG---UGGa--UGuGcCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	4970	0.69	0.607882
	Target:  5'- gCCGCGGCGuCCuCUgggGCccggaGGGCGCCGa -3' miRNA:   3'- -GGCGUCGU-GGuGGa--UGug---CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	5105	0.7	0.529022
	Target:  5'- gCCaCAGCuCCGCCagcucgGCGCGGGCggcccGCCGg -3' miRNA:   3'- -GGcGUCGuGGUGGa-----UGUGCCCG-----UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	5191	0.7	0.519399
	Target:  5'- gCGCAGCACgUGCgUGCGCGGuggcGCGCCc -3' miRNA:   3'- gGCGUCGUG-GUGgAUGUGCC----CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	5328	0.72	0.454233
	Target:  5'- gCCGCucGGCGCCGCC--CGCGGcGC-CCGg -3' miRNA:   3'- -GGCG--UCGUGGUGGauGUGCC-CGuGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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