miRNA display CGI


Results 41 - 60 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 134496 0.74 0.353882
Target:  5'- gCGguGCGCCGCCgGCGCGuccGGCAgCGg -3'
miRNA:   3'- gGCguCGUGGUGGaUGUGC---CCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 134456 0.73 0.402075
Target:  5'- aCCGCuGCGCUgcgGCCUGcCGCGaGGCGCUa -3'
miRNA:   3'- -GGCGuCGUGG---UGGAU-GUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 134366 0.68 0.647928
Target:  5'- gCGCcGUGCuCGCCggcCGCGcGGCGCCGg -3'
miRNA:   3'- gGCGuCGUG-GUGGau-GUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 134345 0.73 0.368694
Target:  5'- aCCGCAagcccccGCGCCGCC-GCGCGGggggcgGCGCCGc -3'
miRNA:   3'- -GGCGU-------CGUGGUGGaUGUGCC------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 134313 0.75 0.303004
Target:  5'- cCCGgaggcCGGCGCCGgCgGCGCGGGCGCCc -3'
miRNA:   3'- -GGC-----GUCGUGGUgGaUGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 134094 0.72 0.41904
Target:  5'- gCUGCAGCGgCGCgUGCA-GGGCuGCCGg -3'
miRNA:   3'- -GGCGUCGUgGUGgAUGUgCCCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 133997 0.68 0.657928
Target:  5'- aCGCGGCGCUgguggACCUGgugUACGcGCGCCGc -3'
miRNA:   3'- gGCGUCGUGG-----UGGAU---GUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133868 0.66 0.768503
Target:  5'- aCUGCcGCGCCuACCUGuggucugcgcaagccCGCGGcGCGCUGc -3'
miRNA:   3'- -GGCGuCGUGG-UGGAU---------------GUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133759 0.78 0.208237
Target:  5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133714 0.71 0.490968
Target:  5'- gCCGCGGCGcCCGCgCggggcgcgACugGGGC-CCGc -3'
miRNA:   3'- -GGCGUCGU-GGUG-Ga-------UGugCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 133640 0.68 0.677861
Target:  5'- cUCGCcGCGCCG-CUGCGCGaGCGCUGc -3'
miRNA:   3'- -GGCGuCGUGGUgGAUGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133589 0.68 0.681832
Target:  5'- gCCGCgcuggcgcugcucacGGC-CCACCUcGCGCuGGCGCUGu -3'
miRNA:   3'- -GGCG---------------UCGuGGUGGA-UGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133380 0.69 0.617885
Target:  5'- cCUGC-GCGCgGCC--CACGGGCGCgCGg -3'
miRNA:   3'- -GGCGuCGUGgUGGauGUGCCCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 133350 0.71 0.46328
Target:  5'- gCGCGGCGCUGCC-GCGCaGGGCuuCGg -3'
miRNA:   3'- gGCGUCGUGGUGGaUGUG-CCCGugGC- -5'
23576 5' -59.1 NC_005261.1 + 133319 0.66 0.783105
Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3'
miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 133277 0.75 0.309219
Target:  5'- gCCGCggccgggGGCGCCuggGCCgcgGCGCGGGCGCUc -3'
miRNA:   3'- -GGCG-------UCGUGG---UGGa--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 133246 0.7 0.548457
Target:  5'- gCGgAGCACUACCcgcaggcgGCGCgcgaguaccaGGGCGCCGg -3'
miRNA:   3'- gGCgUCGUGGUGGa-------UGUG----------CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133162 0.7 0.56811
Target:  5'- gCCGuCGGCgucGCCGCCgACAacCGcGGCGCCGu -3'
miRNA:   3'- -GGC-GUCG---UGGUGGaUGU--GC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133080 0.73 0.369485
Target:  5'- aCGCGGC-CCGCCgggccgagGCGCGcGaGCGCCGg -3'
miRNA:   3'- gGCGUCGuGGUGGa-------UGUGC-C-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133016 0.76 0.257946
Target:  5'- aCGCuGCGCCACC--CGCGGGCGCg- -3'
miRNA:   3'- gGCGuCGUGGUGGauGUGCCCGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.