Results 41 - 60 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 54540 | 0.8 | 0.151162 |
Target: 5'- gCUGCGGCGCCGCCUcgGCGGcGCGCUGc -3' miRNA: 3'- -GGCGUCGUGGUGGAugUGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 7446 | 0.8 | 0.154993 |
Target: 5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3' miRNA: 3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 19648 | 0.79 | 0.16292 |
Target: 5'- uCCGCGGCggcggcgcgcGCCGCCgcgcGCGCGGGCACgGc -3' miRNA: 3'- -GGCGUCG----------UGGUGGa---UGUGCCCGUGgC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 67678 | 0.79 | 0.166192 |
Target: 5'- uUCGCGGCGCC-CUgcggcgggugggGCGCGGGCGCCGc -3' miRNA: 3'- -GGCGUCGUGGuGGa-----------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 106209 | 0.79 | 0.175496 |
Target: 5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3' miRNA: 3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 41546 | 0.78 | 0.188928 |
Target: 5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3' miRNA: 3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 79244 | 0.78 | 0.1955 |
Target: 5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3' miRNA: 3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 75718 | 0.78 | 0.198377 |
Target: 5'- gCGCGGCGCCuuCCUgcagaACACGGGC-CCGu -3' miRNA: 3'- gGCGUCGUGGu-GGA-----UGUGCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 64865 | 0.78 | 0.203255 |
Target: 5'- gCCGCgugcuGGCGCCGCCUGaGCcGGCGCCGg -3' miRNA: 3'- -GGCG-----UCGUGGUGGAUgUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 133759 | 0.78 | 0.208237 |
Target: 5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3' miRNA: 3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 9422 | 0.77 | 0.213323 |
Target: 5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3' miRNA: 3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 39183 | 0.77 | 0.213323 |
Target: 5'- aCGCAGCugCAgCUcGCGCGGGUGCUGu -3' miRNA: 3'- gGCGUCGugGUgGA-UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 58121 | 0.77 | 0.213323 |
Target: 5'- gCCGCGGCGCCcaagccgguACCgcgGCGCGcGCGCCGg -3' miRNA: 3'- -GGCGUCGUGG---------UGGa--UGUGCcCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 80821 | 0.77 | 0.218516 |
Target: 5'- cUCGCGGCGCCgGCCgcgauCACGGGCGCg- -3' miRNA: 3'- -GGCGUCGUGG-UGGau---GUGCCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 136789 | 0.77 | 0.223817 |
Target: 5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3' miRNA: 3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 80261 | 0.77 | 0.224353 |
Target: 5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3' miRNA: 3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 34721 | 0.77 | 0.229226 |
Target: 5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3' miRNA: 3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 49432 | 0.77 | 0.229226 |
Target: 5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3' miRNA: 3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 61170 | 0.77 | 0.229226 |
Target: 5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3' miRNA: 3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 297 | 0.77 | 0.234746 |
Target: 5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3' miRNA: 3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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