miRNA display CGI


Results 41 - 60 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 87405 0.66 0.792065
Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 94469 0.66 0.774016
Target:  5'- uCCGCgucGGCGucgucCCGCggGC-CGGGCACCu -3'
miRNA:   3'- -GGCG---UCGU-----GGUGgaUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 95077 0.66 0.764805
Target:  5'- cCCGCgAGCGCgACCgcgACGgCGaGGCcgauGCCGa -3'
miRNA:   3'- -GGCG-UCGUGgUGGa--UGU-GC-CCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 2669 0.66 0.764805
Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 118077 0.66 0.774016
Target:  5'- gCCGCAGCcgcGCuCGUCUGCugGcGGCccGCCGc -3'
miRNA:   3'- -GGCGUCG---UG-GUGGAUGugC-CCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 126506 0.66 0.792065
Target:  5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3'
miRNA:   3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 93447 0.66 0.792065
Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3'
miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 115450 0.66 0.792065
Target:  5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3'
miRNA:   3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5'
23576 5' -59.1 NC_005261.1 + 66565 0.66 0.789391
Target:  5'- gCCGCgcucgaacgaguccAGCACCGUCUGCACGuuGCGCgCGa -3'
miRNA:   3'- -GGCG--------------UCGUGGUGGAUGUGCc-CGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 57673 0.66 0.783105
Target:  5'- gCGCgAGCGCCAgCCgGCG-GGGCACa- -3'
miRNA:   3'- gGCG-UCGUGGU-GGaUGUgCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 63495 0.66 0.783105
Target:  5'- aCGCaAGguCCGCCgAgACGGGCGUCGc -3'
miRNA:   3'- gGCG-UCguGGUGGaUgUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 2316 0.66 0.792065
Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3'
miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576 5' -59.1 NC_005261.1 + 32129 0.66 0.792065
Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3'
miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 15919 0.66 0.774016
Target:  5'- gCGCAGCcgggGCCgggGCCgggGCcCGGGCaggaGCCGg -3'
miRNA:   3'- gGCGUCG----UGG---UGGa--UGuGCCCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 61139 0.66 0.774016
Target:  5'- gCGCaAGuCAUgGCCgUGCACcGGCGCCGc -3'
miRNA:   3'- gGCG-UC-GUGgUGG-AUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 117944 0.66 0.774016
Target:  5'- cCCGUGcGCGCuCGCUgcUACGGGCGCg- -3'
miRNA:   3'- -GGCGU-CGUG-GUGGauGUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 60205 0.66 0.764805
Target:  5'- uCCGCGcgcGCGCUcCCgcCGCgGGGCGCCc -3'
miRNA:   3'- -GGCGU---CGUGGuGGauGUG-CCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 114817 1.09 0.001358
Target:  5'- gCCGCAGCACCACCUACACGGGCACCGu -3'
miRNA:   3'- -GGCGUCGUGGUGGAUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 94864 0.66 0.764805
Target:  5'- cUCGC-GCACgGCCcGgGCGGGCGgcCCGc -3'
miRNA:   3'- -GGCGuCGUGgUGGaUgUGCCCGU--GGC- -5'
23576 5' -59.1 NC_005261.1 + 133868 0.66 0.768503
Target:  5'- aCUGCcGCGCCuACCUGuggucugcgcaagccCGCGGcGCGCUGc -3'
miRNA:   3'- -GGCGuCGUGG-UGGAU---------------GUGCC-CGUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.