miRNA display CGI

Results 41 - 60 of 1223 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	127697	0.66	0.774016
	Target:  5'- cCCgGCGGCGCCggaggAgCUGCGCGuGGCcuGCCu -3' miRNA:   3'- -GG-CGUCGUGG-----UgGAUGUGC-CCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	47158	0.66	0.792065
	Target:  5'- uCgGCGGCcgagACCACCa--GCGGGaCGCCc -3' miRNA:   3'- -GgCGUCG----UGGUGGaugUGCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	77039	0.66	0.795611
	Target:  5'- gCCGCGcGCGCggcccucggcgaccgCGCCUggccggugccGCGCGaGGCGCUGg -3' miRNA:   3'- -GGCGU-CGUG---------------GUGGA----------UGUGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137677	0.66	0.774016
	Target:  5'- cCCGgGGCcccccACCGCCccucgUGCAgCGGGCcCCGc -3' miRNA:   3'- -GGCgUCG-----UGGUGG-----AUGU-GCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127761	0.65	0.799134
	Target:  5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA:   3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	107731	0.66	0.764805
	Target:  5'- -gGCGGCugCGCCUcggcCGCGGGggggGCCa -3' miRNA:   3'- ggCGUCGugGUGGAu---GUGCCCg---UGGc -5'
23576	5'	-59.1	NC_005261.1	+	115450	0.66	0.792065
	Target:  5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3' miRNA:   3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	36586	0.66	0.764805
	Target:  5'- cCCGCcGCgGCCACCggGgGgGGGCAgCGc -3' miRNA:   3'- -GGCGuCG-UGGUGGa-UgUgCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	133868	0.66	0.768503
	Target:  5'- aCUGCcGCGCCuACCUGuggucugcgcaagccCGCGGcGCGCUGc -3' miRNA:   3'- -GGCGuCGUGG-UGGAU---------------GUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	30879	0.66	0.774016
	Target:  5'- gCCGcCGGCccuGCCGCCcgagcucggGCugGGGCcgcCCGg -3' miRNA:   3'- -GGC-GUCG---UGGUGGa--------UGugCCCGu--GGC- -5'
23576	5'	-59.1	NC_005261.1	+	71777	0.66	0.774016
	Target:  5'- aCCGCGGC-CCGCUcGCagcugaGCGcGGC-CCGg -3' miRNA:   3'- -GGCGUCGuGGUGGaUG------UGC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	109239	0.66	0.774016
	Target:  5'- gCUGCAGCGCgGCCcagUGCGGG-GCCa -3' miRNA:   3'- -GGCGUCGUGgUGGau-GUGCCCgUGGc -5'
23576	5'	-59.1	NC_005261.1	+	117944	0.66	0.774016
	Target:  5'- cCCGUGcGCGCuCGCUgcUACGGGCGCg- -3' miRNA:   3'- -GGCGU-CGUG-GUGGauGUGCCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	94714	0.66	0.783105
	Target:  5'- gCUGgAGCGCCGCUaccuccgGgGCGGGgaCACCGa -3' miRNA:   3'- -GGCgUCGUGGUGGa------UgUGCCC--GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	100059	0.66	0.783105
	Target:  5'- gCGCGcCGCCGCCgccCGgGGGCgcGCCGc -3' miRNA:   3'- gGCGUcGUGGUGGau-GUgCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	118492	0.66	0.783105
	Target:  5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3' miRNA:   3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	2316	0.66	0.792065
	Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	128310	0.66	0.792065
	Target:  5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3' miRNA:   3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	17167	0.66	0.792065
	Target:  5'- cCCGCGGCGCgGgcgugggcagcCCUGC-CGcGGCGgCGa -3' miRNA:   3'- -GGCGUCGUGgU-----------GGAUGuGC-CCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	75582	0.66	0.792065
	Target:  5'- gCgGCGGCGCgGCgCU-CGCGcGCGCCGc -3' miRNA:   3'- -GgCGUCGUGgUG-GAuGUGCcCGUGGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home