Results 41 - 60 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 87405 | 0.66 | 0.792065 |
Target: 5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3' miRNA: 3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 94469 | 0.66 | 0.774016 |
Target: 5'- uCCGCgucGGCGucgucCCGCggGC-CGGGCACCu -3' miRNA: 3'- -GGCG---UCGU-----GGUGgaUGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 95077 | 0.66 | 0.764805 |
Target: 5'- cCCGCgAGCGCgACCgcgACGgCGaGGCcgauGCCGa -3' miRNA: 3'- -GGCG-UCGUGgUGGa--UGU-GC-CCG----UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 2669 | 0.66 | 0.764805 |
Target: 5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3' miRNA: 3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 118077 | 0.66 | 0.774016 |
Target: 5'- gCCGCAGCcgcGCuCGUCUGCugGcGGCccGCCGc -3' miRNA: 3'- -GGCGUCG---UG-GUGGAUGugC-CCG--UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 126506 | 0.66 | 0.792065 |
Target: 5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3' miRNA: 3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 93447 | 0.66 | 0.792065 |
Target: 5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3' miRNA: 3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 115450 | 0.66 | 0.792065 |
Target: 5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3' miRNA: 3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 66565 | 0.66 | 0.789391 |
Target: 5'- gCCGCgcucgaacgaguccAGCACCGUCUGCACGuuGCGCgCGa -3' miRNA: 3'- -GGCG--------------UCGUGGUGGAUGUGCc-CGUG-GC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 57673 | 0.66 | 0.783105 |
Target: 5'- gCGCgAGCGCCAgCCgGCG-GGGCACa- -3' miRNA: 3'- gGCG-UCGUGGU-GGaUGUgCCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 63495 | 0.66 | 0.783105 |
Target: 5'- aCGCaAGguCCGCCgAgACGGGCGUCGc -3' miRNA: 3'- gGCG-UCguGGUGGaUgUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 2316 | 0.66 | 0.792065 |
Target: 5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA: 3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 32129 | 0.66 | 0.792065 |
Target: 5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA: 3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 15919 | 0.66 | 0.774016 |
Target: 5'- gCGCAGCcgggGCCgggGCCgggGCcCGGGCaggaGCCGg -3' miRNA: 3'- gGCGUCG----UGG---UGGa--UGuGCCCG----UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 61139 | 0.66 | 0.774016 |
Target: 5'- gCGCaAGuCAUgGCCgUGCACcGGCGCCGc -3' miRNA: 3'- gGCG-UC-GUGgUGG-AUGUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 117944 | 0.66 | 0.774016 |
Target: 5'- cCCGUGcGCGCuCGCUgcUACGGGCGCg- -3' miRNA: 3'- -GGCGU-CGUG-GUGGauGUGCCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 60205 | 0.66 | 0.764805 |
Target: 5'- uCCGCGcgcGCGCUcCCgcCGCgGGGCGCCc -3' miRNA: 3'- -GGCGU---CGUGGuGGauGUG-CCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 114817 | 1.09 | 0.001358 |
Target: 5'- gCCGCAGCACCACCUACACGGGCACCGu -3' miRNA: 3'- -GGCGUCGUGGUGGAUGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 94864 | 0.66 | 0.764805 |
Target: 5'- cUCGC-GCACgGCCcGgGCGGGCGgcCCGc -3' miRNA: 3'- -GGCGuCGUGgUGGaUgUGCCCGU--GGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 133868 | 0.66 | 0.768503 |
Target: 5'- aCUGCcGCGCCuACCUGuggucugcgcaagccCGCGGcGCGCUGc -3' miRNA: 3'- -GGCGuCGUGG-UGGAU---------------GUGCC-CGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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