Results 21 - 40 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 67487 | 0.65 | 0.800011 |
Target: 5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3' miRNA: 3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 57673 | 0.66 | 0.783105 |
Target: 5'- gCGCgAGCGCCAgCCgGCG-GGGCACa- -3' miRNA: 3'- gGCG-UCGUGGU-GGaUGUgCCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 94714 | 0.66 | 0.783105 |
Target: 5'- gCUGgAGCGCCGCUaccuccgGgGCGGGgaCACCGa -3' miRNA: 3'- -GGCgUCGUGGUGGa------UgUGCCC--GUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 91436 | 0.66 | 0.791175 |
Target: 5'- gCCGCGGUgaaCGCgCUGCGCGGcacggccccgcccGCGCCu -3' miRNA: 3'- -GGCGUCGug-GUG-GAUGUGCC-------------CGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 132563 | 0.66 | 0.792065 |
Target: 5'- gCGCAGUACgGCUgcgaagACGuCGGcGCGCCc -3' miRNA: 3'- gGCGUCGUGgUGGa-----UGU-GCC-CGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 15477 | 0.66 | 0.774016 |
Target: 5'- aCCGCGGCggacacgcGCCGCUcGCuGCGGGCGg-- -3' miRNA: 3'- -GGCGUCG--------UGGUGGaUG-UGCCCGUggc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 137677 | 0.66 | 0.774016 |
Target: 5'- cCCGgGGCcccccACCGCCccucgUGCAgCGGGCcCCGc -3' miRNA: 3'- -GGCgUCG-----UGGUGG-----AUGU-GCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 62882 | 0.66 | 0.792065 |
Target: 5'- gCGCGGCGCaGCCcGCGCGaGGCGg-- -3' miRNA: 3'- gGCGUCGUGgUGGaUGUGC-CCGUggc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 28802 | 0.66 | 0.783105 |
Target: 5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3' miRNA: 3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 118492 | 0.66 | 0.783105 |
Target: 5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3' miRNA: 3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 87405 | 0.66 | 0.792065 |
Target: 5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3' miRNA: 3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 93447 | 0.66 | 0.792065 |
Target: 5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3' miRNA: 3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 94469 | 0.66 | 0.774016 |
Target: 5'- uCCGCgucGGCGucgucCCGCggGC-CGGGCACCu -3' miRNA: 3'- -GGCG---UCGU-----GGUGgaUGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 118077 | 0.66 | 0.774016 |
Target: 5'- gCCGCAGCcgcGCuCGUCUGCugGcGGCccGCCGc -3' miRNA: 3'- -GGCGUCG---UG-GUGGAUGugC-CCG--UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 63495 | 0.66 | 0.783105 |
Target: 5'- aCGCaAGguCCGCCgAgACGGGCGUCGc -3' miRNA: 3'- gGCG-UCguGGUGGaUgUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 126506 | 0.66 | 0.792065 |
Target: 5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3' miRNA: 3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 132159 | 0.66 | 0.792065 |
Target: 5'- -aGC-GCGCCGCCgcugcaggcaGCGCGGGCGggggcCCGc -3' miRNA: 3'- ggCGuCGUGGUGGa---------UGUGCCCGU-----GGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 115450 | 0.66 | 0.792065 |
Target: 5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3' miRNA: 3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 66565 | 0.66 | 0.789391 |
Target: 5'- gCCGCgcucgaacgaguccAGCACCGUCUGCACGuuGCGCgCGa -3' miRNA: 3'- -GGCG--------------UCGUGGUGGAUGUGCc-CGUG-GC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 125660 | 0.66 | 0.783105 |
Target: 5'- cCCaGCAGCgcgucauacguGCCGCCga-AUGGGUuuGCCGg -3' miRNA: 3'- -GG-CGUCG-----------UGGUGGaugUGCCCG--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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