miRNA display CGI


Results 21 - 40 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 67487 0.65 0.800011
Target:  5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 57673 0.66 0.783105
Target:  5'- gCGCgAGCGCCAgCCgGCG-GGGCACa- -3'
miRNA:   3'- gGCG-UCGUGGU-GGaUGUgCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 94714 0.66 0.783105
Target:  5'- gCUGgAGCGCCGCUaccuccgGgGCGGGgaCACCGa -3'
miRNA:   3'- -GGCgUCGUGGUGGa------UgUGCCC--GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 91436 0.66 0.791175
Target:  5'- gCCGCGGUgaaCGCgCUGCGCGGcacggccccgcccGCGCCu -3'
miRNA:   3'- -GGCGUCGug-GUG-GAUGUGCC-------------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 132563 0.66 0.792065
Target:  5'- gCGCAGUACgGCUgcgaagACGuCGGcGCGCCc -3'
miRNA:   3'- gGCGUCGUGgUGGa-----UGU-GCC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 15477 0.66 0.774016
Target:  5'- aCCGCGGCggacacgcGCCGCUcGCuGCGGGCGg-- -3'
miRNA:   3'- -GGCGUCG--------UGGUGGaUG-UGCCCGUggc -5'
23576 5' -59.1 NC_005261.1 + 137677 0.66 0.774016
Target:  5'- cCCGgGGCcccccACCGCCccucgUGCAgCGGGCcCCGc -3'
miRNA:   3'- -GGCgUCG-----UGGUGG-----AUGU-GCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 62882 0.66 0.792065
Target:  5'- gCGCGGCGCaGCCcGCGCGaGGCGg-- -3'
miRNA:   3'- gGCGUCGUGgUGGaUGUGC-CCGUggc -5'
23576 5' -59.1 NC_005261.1 + 28802 0.66 0.783105
Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3'
miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 118492 0.66 0.783105
Target:  5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3'
miRNA:   3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87405 0.66 0.792065
Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 93447 0.66 0.792065
Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3'
miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 94469 0.66 0.774016
Target:  5'- uCCGCgucGGCGucgucCCGCggGC-CGGGCACCu -3'
miRNA:   3'- -GGCG---UCGU-----GGUGgaUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 118077 0.66 0.774016
Target:  5'- gCCGCAGCcgcGCuCGUCUGCugGcGGCccGCCGc -3'
miRNA:   3'- -GGCGUCG---UG-GUGGAUGugC-CCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 63495 0.66 0.783105
Target:  5'- aCGCaAGguCCGCCgAgACGGGCGUCGc -3'
miRNA:   3'- gGCG-UCguGGUGGaUgUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 126506 0.66 0.792065
Target:  5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3'
miRNA:   3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 132159 0.66 0.792065
Target:  5'- -aGC-GCGCCGCCgcugcaggcaGCGCGGGCGggggcCCGc -3'
miRNA:   3'- ggCGuCGUGGUGGa---------UGUGCCCGU-----GGC- -5'
23576 5' -59.1 NC_005261.1 + 115450 0.66 0.792065
Target:  5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3'
miRNA:   3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5'
23576 5' -59.1 NC_005261.1 + 66565 0.66 0.789391
Target:  5'- gCCGCgcucgaacgaguccAGCACCGUCUGCACGuuGCGCgCGa -3'
miRNA:   3'- -GGCG--------------UCGUGGUGGAUGUGCc-CGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 125660 0.66 0.783105
Target:  5'- cCCaGCAGCgcgucauacguGCCGCCga-AUGGGUuuGCCGg -3'
miRNA:   3'- -GG-CGUCG-----------UGGUGGaugUGCCCG--UGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.