Results 21 - 40 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 48944 | 0.79 | 0.16292 |
Target: 5'- cUCGaCGGCGcCCGCCUcggugaGCACGGGCACCu -3' miRNA: 3'- -GGC-GUCGU-GGUGGA------UGUGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 102655 | 0.79 | 0.16292 |
Target: 5'- cCCGCAGCACCuCCUcCGCGGcgcccaGCGCCGc -3' miRNA: 3'- -GGCGUCGUGGuGGAuGUGCC------CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 19648 | 0.79 | 0.16292 |
Target: 5'- uCCGCGGCggcggcgcgcGCCGCCgcgcGCGCGGGCACgGc -3' miRNA: 3'- -GGCGUCG----------UGGUGGa---UGUGCCCGUGgC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 67678 | 0.79 | 0.166192 |
Target: 5'- uUCGCGGCGCC-CUgcggcgggugggGCGCGGGCGCCGc -3' miRNA: 3'- -GGCGUCGUGGuGGa-----------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 68981 | 0.79 | 0.170787 |
Target: 5'- aCCGCGGC-CCuuuucggGCC-GCGCGGGCGCCGc -3' miRNA: 3'- -GGCGUCGuGG-------UGGaUGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 59224 | 0.79 | 0.171211 |
Target: 5'- cUCGUAGUGCCGCCggGCcacgagcgagaGCGGGCGCCGg -3' miRNA: 3'- -GGCGUCGUGGUGGa-UG-----------UGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 63008 | 0.79 | 0.171211 |
Target: 5'- uCgGCGGC-CgCGCCcGCGCGGGCGCCGg -3' miRNA: 3'- -GgCGUCGuG-GUGGaUGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 129299 | 0.79 | 0.171211 |
Target: 5'- cCCGCccccGGCGCCccgcGCCUGCGCuGGCGCCGc -3' miRNA: 3'- -GGCG----UCGUGG----UGGAUGUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 106209 | 0.79 | 0.175496 |
Target: 5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3' miRNA: 3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 59018 | 0.79 | 0.175496 |
Target: 5'- cCCaGCGGCGCCGCCaggaACGGGUGCCGc -3' miRNA: 3'- -GG-CGUCGUGGUGGaug-UGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 1692 | 0.79 | 0.175496 |
Target: 5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3' miRNA: 3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 69167 | 0.79 | 0.175496 |
Target: 5'- gCCGCcGCGCC-CCUugACgaGGGCACCGu -3' miRNA: 3'- -GGCGuCGUGGuGGAugUG--CCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 95742 | 0.79 | 0.179876 |
Target: 5'- -aGCGGCGCCGCCgccgccgcCGgGGGCGCCGg -3' miRNA: 3'- ggCGUCGUGGUGGau------GUgCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 89176 | 0.79 | 0.179876 |
Target: 5'- aCCGCGGacaACCuggaGCCgcuCGCGGGCGCCGa -3' miRNA: 3'- -GGCGUCg--UGG----UGGau-GUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 50006 | 0.79 | 0.179876 |
Target: 5'- -aGCcGCGCCGCCagcGCGCGGGCGCCc -3' miRNA: 3'- ggCGuCGUGGUGGa--UGUGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 41546 | 0.78 | 0.188928 |
Target: 5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3' miRNA: 3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 15782 | 0.78 | 0.193602 |
Target: 5'- gCCGCuggcgGGCGCCGCCcGCGCGGccaGCGCCGc -3' miRNA: 3'- -GGCG-----UCGUGGUGGaUGUGCC---CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 68710 | 0.78 | 0.193602 |
Target: 5'- aCgGCGGCGCCGgcCCUcacGCgGCGGGCGCCGg -3' miRNA: 3'- -GgCGUCGUGGU--GGA---UG-UGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 79244 | 0.78 | 0.1955 |
Target: 5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3' miRNA: 3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 119880 | 0.78 | 0.197895 |
Target: 5'- gCCGCAGCcgagggcguguacACCuggcGCCgcgACGCGGGCGCCa -3' miRNA: 3'- -GGCGUCG-------------UGG----UGGa--UGUGCCCGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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