miRNA display CGI


Results 21 - 40 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 48944 0.79 0.16292
Target:  5'- cUCGaCGGCGcCCGCCUcggugaGCACGGGCACCu -3'
miRNA:   3'- -GGC-GUCGU-GGUGGA------UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 102655 0.79 0.16292
Target:  5'- cCCGCAGCACCuCCUcCGCGGcgcccaGCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGuGGAuGUGCC------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 19648 0.79 0.16292
Target:  5'- uCCGCGGCggcggcgcgcGCCGCCgcgcGCGCGGGCACgGc -3'
miRNA:   3'- -GGCGUCG----------UGGUGGa---UGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 67678 0.79 0.166192
Target:  5'- uUCGCGGCGCC-CUgcggcgggugggGCGCGGGCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGuGGa-----------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 68981 0.79 0.170787
Target:  5'- aCCGCGGC-CCuuuucggGCC-GCGCGGGCGCCGc -3'
miRNA:   3'- -GGCGUCGuGG-------UGGaUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 59224 0.79 0.171211
Target:  5'- cUCGUAGUGCCGCCggGCcacgagcgagaGCGGGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGGUGGa-UG-----------UGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 63008 0.79 0.171211
Target:  5'- uCgGCGGC-CgCGCCcGCGCGGGCGCCGg -3'
miRNA:   3'- -GgCGUCGuG-GUGGaUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 129299 0.79 0.171211
Target:  5'- cCCGCccccGGCGCCccgcGCCUGCGCuGGCGCCGc -3'
miRNA:   3'- -GGCG----UCGUGG----UGGAUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 106209 0.79 0.175496
Target:  5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3'
miRNA:   3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 59018 0.79 0.175496
Target:  5'- cCCaGCGGCGCCGCCaggaACGGGUGCCGc -3'
miRNA:   3'- -GG-CGUCGUGGUGGaug-UGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 1692 0.79 0.175496
Target:  5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3'
miRNA:   3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 69167 0.79 0.175496
Target:  5'- gCCGCcGCGCC-CCUugACgaGGGCACCGu -3'
miRNA:   3'- -GGCGuCGUGGuGGAugUG--CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 95742 0.79 0.179876
Target:  5'- -aGCGGCGCCGCCgccgccgcCGgGGGCGCCGg -3'
miRNA:   3'- ggCGUCGUGGUGGau------GUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 89176 0.79 0.179876
Target:  5'- aCCGCGGacaACCuggaGCCgcuCGCGGGCGCCGa -3'
miRNA:   3'- -GGCGUCg--UGG----UGGau-GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 50006 0.79 0.179876
Target:  5'- -aGCcGCGCCGCCagcGCGCGGGCGCCc -3'
miRNA:   3'- ggCGuCGUGGUGGa--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 41546 0.78 0.188928
Target:  5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3'
miRNA:   3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 15782 0.78 0.193602
Target:  5'- gCCGCuggcgGGCGCCGCCcGCGCGGccaGCGCCGc -3'
miRNA:   3'- -GGCG-----UCGUGGUGGaUGUGCC---CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 68710 0.78 0.193602
Target:  5'- aCgGCGGCGCCGgcCCUcacGCgGCGGGCGCCGg -3'
miRNA:   3'- -GgCGUCGUGGU--GGA---UG-UGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 79244 0.78 0.1955
Target:  5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3'
miRNA:   3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 119880 0.78 0.197895
Target:  5'- gCCGCAGCcgagggcguguacACCuggcGCCgcgACGCGGGCGCCa -3'
miRNA:   3'- -GGCGUCG-------------UGG----UGGa--UGUGCCCGUGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.