miRNA display CGI


Results 21 - 40 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 2284 0.74 0.331362
Target:  5'- -gGCGGCGCCGCCaGCGCcuccccGGGCAgCGg -3'
miRNA:   3'- ggCGUCGUGGUGGaUGUG------CCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 2316 0.66 0.792065
Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3'
miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576 5' -59.1 NC_005261.1 + 2381 0.71 0.460556
Target:  5'- gCCGCAGCGgCGCgCUGgcggcgagcgcgccCGCGGGCcCCGc -3'
miRNA:   3'- -GGCGUCGUgGUG-GAU--------------GUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 2459 0.7 0.56811
Target:  5'- -aGCGGCACgCGCuCUGCGcCGGagcGCACCGc -3'
miRNA:   3'- ggCGUCGUG-GUG-GAUGU-GCC---CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 2542 0.75 0.303004
Target:  5'- gCCGcCAGCGCCGCg-GCGCuGGGCGCgGg -3'
miRNA:   3'- -GGC-GUCGUGGUGgaUGUG-CCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 2593 0.71 0.472421
Target:  5'- aCGCGGCggaaGCCGCCgucgGCgGCGGGgcCGCCGg -3'
miRNA:   3'- gGCGUCG----UGGUGGa---UG-UGCCC--GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 2631 0.71 0.509847
Target:  5'- gCCGCAGguUCuCCaGCAC-GGCGCCGg -3'
miRNA:   3'- -GGCGUCguGGuGGaUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 2669 0.66 0.764805
Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 2784 0.76 0.270233
Target:  5'- cCCGCAGCgcccgcGCCGCCUGgGCGGcgugcgagcGCACCu -3'
miRNA:   3'- -GGCGUCG------UGGUGGAUgUGCC---------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 2927 0.67 0.717229
Target:  5'- gCCcCAGCACCuccaccGCCgcgGC-CGGGCuCCGg -3'
miRNA:   3'- -GGcGUCGUGG------UGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 3108 0.7 0.519399
Target:  5'- cCCGCcGCGCUGCggagACGCGGGguCCGc -3'
miRNA:   3'- -GGCGuCGUGGUGga--UGUGCCCguGGC- -5'
23576 5' -59.1 NC_005261.1 + 3156 0.66 0.755481
Target:  5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3'
miRNA:   3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 3194 0.7 0.56811
Target:  5'- gCCGCAGgcgucggccuCGCCGCCgcgGCcgcguGCGGGCccGCCGc -3'
miRNA:   3'- -GGCGUC----------GUGGUGGa--UG-----UGCCCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 3345 0.72 0.427684
Target:  5'- gCCGCGGCGCCcggcgcgccgGCCUucagggccgcgaGCGCGGccgccagccGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG----------UGGA------------UGUGCC---------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 3354 0.69 0.617885
Target:  5'- aCGCacAGCAggggcCCGCggggGCGCGGGCGCCu -3'
miRNA:   3'- gGCG--UCGU-----GGUGga--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 3472 0.71 0.500368
Target:  5'- uCCGCcaUGCCGCCgcggguCGCGGGUGCCGu -3'
miRNA:   3'- -GGCGucGUGGUGGau----GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 3498 0.67 0.746053
Target:  5'- aCgGUucGCGCCGCCaGCGCGGcCGCCu -3'
miRNA:   3'- -GgCGu-CGUGGUGGaUGUGCCcGUGGc -5'
23576 5' -59.1 NC_005261.1 + 3529 0.74 0.31979
Target:  5'- gCGCGGCgGCCGCCUcgGCGCGcagcgcggcgggcgcGGCGCCGc -3'
miRNA:   3'- gGCGUCG-UGGUGGA--UGUGC---------------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 3580 0.69 0.607882
Target:  5'- gCGCGcGCuCCACCgcguCGCGGGCcgcGCCa -3'
miRNA:   3'- gGCGU-CGuGGUGGau--GUGCCCG---UGGc -5'
23576 5' -59.1 NC_005261.1 + 3674 0.72 0.41904
Target:  5'- gCCGCGGCGCCGCCcaGCAagGGGCGg-- -3'
miRNA:   3'- -GGCGUCGUGGUGGa-UGUg-CCCGUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.