miRNA display CGI

Results 1 - 20 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	104	0.68	0.657928
	Target:  5'- cCCG-GGCcccGCCGCCcGCGCcGGCGCCGc -3' miRNA:   3'- -GGCgUCG---UGGUGGaUGUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	197	0.71	0.481651
	Target:  5'- aCCGCcGcCACCGCCgccgggccGCGcCGGGCugCGg -3' miRNA:   3'- -GGCGuC-GUGGUGGa-------UGU-GCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	201	0.7	0.516526
	Target:  5'- gCCaGCGGUGCCGCCgccgccccuggugcuCGCGGGCcCCGc -3' miRNA:   3'- -GG-CGUCGUGGUGGau-------------GUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	297	0.77	0.234746
	Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	353	0.72	0.41904
	Target:  5'- gCgGCGGCACCGCUggccccgggaGCACcagGGGCGCCa -3' miRNA:   3'- -GgCGUCGUGGUGGa---------UGUG---CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	421	0.77	0.234746
	Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3' miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	646	0.68	0.657928
	Target:  5'- gCCGcCAGCGCCGCgUcC-CcGGCGCCGa -3' miRNA:   3'- -GGC-GUCGUGGUGgAuGuGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	797	0.67	0.70747
	Target:  5'- cCCGCGcCGCCGCCcccCACGcGCGCCc -3' miRNA:   3'- -GGCGUcGUGGUGGau-GUGCcCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	1182	0.66	0.774016
	Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3' miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1336	0.71	0.499425
	Target:  5'- gCCGCcGCGCCgcGCCUGCaccagcgucucccGCGGGCcCUGg -3' miRNA:   3'- -GGCGuCGUGG--UGGAUG-------------UGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1386	0.7	0.54748
	Target:  5'- gCCGCAaguucauGCuCUACCUcacgcGCGgGGGCGCCGu -3' miRNA:   3'- -GGCGU-------CGuGGUGGA-----UGUgCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1426	0.67	0.746053
	Target:  5'- -gGCGGCGcCCGCCUccaGCACcagcggcGGCGCCu -3' miRNA:   3'- ggCGUCGU-GGUGGA---UGUGc------CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	1487	0.7	0.558259
	Target:  5'- gCGCAGaaggcCACCGCCgcggccgGCAgcucguCGGGCGCCa -3' miRNA:   3'- gGCGUC-----GUGGUGGa------UGU------GCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	1546	0.69	0.587935
	Target:  5'- cCCGCAGgccagguaCACCgGCCgcaGCGGcGCGCCGa -3' miRNA:   3'- -GGCGUC--------GUGG-UGGaugUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1627	0.67	0.736529
	Target:  5'- gCGCGcGCGCCGCUc-CACGcuGCGCCGg -3' miRNA:   3'- gGCGU-CGUGGUGGauGUGCc-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1647	0.68	0.647928
	Target:  5'- gCCcCAGCGCCGCgcuCUGCGCGGccauguccuuGCGCCc -3' miRNA:   3'- -GGcGUCGUGGUG---GAUGUGCC----------CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	1692	0.79	0.175496
	Target:  5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3' miRNA:   3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1786	0.67	0.717229
	Target:  5'- gCCGCGGCAgaGCCgcaGCGGcgGCGCCc -3' miRNA:   3'- -GGCGUCGUggUGGaugUGCC--CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	1824	0.66	0.774016
	Target:  5'- gCCGCGcGUaaGCgGCCUcgGCGCGcgcgaaGGCGCCGg -3' miRNA:   3'- -GGCGU-CG--UGgUGGA--UGUGC------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	1923	0.72	0.436432
	Target:  5'- gCGCGGCGCaCugCgcCGCGGGCagcACCGc -3' miRNA:   3'- gGCGUCGUG-GugGauGUGCCCG---UGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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