miRNA display CGI

Results 1 - 20 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	36836	0.65	0.800011
	Target:  5'- -aGCGGCGCUG-CUGCugGcggccguggaggaGGCGCCGg -3' miRNA:   3'- ggCGUCGUGGUgGAUGugC-------------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	67487	0.65	0.800011
	Target:  5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	127761	0.65	0.799134
	Target:  5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA:   3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	81416	0.66	0.764805
	Target:  5'- gCCGCGGCACCAggaACAcCGuGGC-CCGc -3' miRNA:   3'- -GGCGUCGUGGUggaUGU-GC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	67331	0.66	0.764805
	Target:  5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3' miRNA:   3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	37092	0.66	0.755481
	Target:  5'- gCCGCcGCGCggcaGCCUcGCGCgaggaccacgaGGGCGCCa -3' miRNA:   3'- -GGCGuCGUGg---UGGA-UGUG-----------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	52292	0.66	0.755481
	Target:  5'- uCCGCGGCGCCcugGCCgccauccagaGCACGgucgagcaGGcCACCGa -3' miRNA:   3'- -GGCGUCGUGG---UGGa---------UGUGC--------CC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	48155	0.66	0.755481
	Target:  5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3' miRNA:   3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4359	0.66	0.755481
	Target:  5'- gCGCAG-ACCACagguagGCGCGGcagucgcgcGCGCCGg -3' miRNA:   3'- gGCGUCgUGGUGga----UGUGCC---------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	64116	0.66	0.764805
	Target:  5'- gCGcCAGgACCACCggguC-CGGGC-CCGg -3' miRNA:   3'- gGC-GUCgUGGUGGau--GuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	91302	0.66	0.755481
	Target:  5'- gCCGCgugAGCACCauccuggacaGCCccgcgugcgUGCGCGGGCuCUGg -3' miRNA:   3'- -GGCG---UCGUGG----------UGG---------AUGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	32003	0.66	0.764805
	Target:  5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3' miRNA:   3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	70760	0.66	0.764805
	Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3' miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	88044	0.66	0.755481
	Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3' miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	73292	0.66	0.764805
	Target:  5'- gCCGCAcGCGCC-CCUGgGCGGcgagcaggaGCACg- -3' miRNA:   3'- -GGCGU-CGUGGuGGAUgUGCC---------CGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	32183	0.66	0.764805
	Target:  5'- aCGCGGCGCUAgg-GC-CGGGCAgCGc -3' miRNA:   3'- gGCGUCGUGGUggaUGuGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	86262	0.66	0.762019
	Target:  5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3' miRNA:   3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	68726	0.66	0.755481
	Target:  5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3' miRNA:   3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	3156	0.66	0.755481
	Target:  5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3' miRNA:   3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	43590	0.66	0.755481
	Target:  5'- gCCGCAuguucGCGCgCGCCgACGacGGCGCCGg -3' miRNA:   3'- -GGCGU-----CGUG-GUGGaUGUgcCCGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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