Results 1 - 20 of 1223 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 36836 | 0.65 | 0.800011 |
Target: 5'- -aGCGGCGCUG-CUGCugGcggccguggaggaGGCGCCGg -3' miRNA: 3'- ggCGUCGUGGUgGAUGugC-------------CCGUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 67487 | 0.65 | 0.800011 |
Target: 5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3' miRNA: 3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 127761 | 0.65 | 0.799134 |
Target: 5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA: 3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 81416 | 0.66 | 0.764805 |
Target: 5'- gCCGCGGCACCAggaACAcCGuGGC-CCGc -3' miRNA: 3'- -GGCGUCGUGGUggaUGU-GC-CCGuGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 67331 | 0.66 | 0.764805 |
Target: 5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3' miRNA: 3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 37092 | 0.66 | 0.755481 |
Target: 5'- gCCGCcGCGCggcaGCCUcGCGCgaggaccacgaGGGCGCCa -3' miRNA: 3'- -GGCGuCGUGg---UGGA-UGUG-----------CCCGUGGc -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 52292 | 0.66 | 0.755481 |
Target: 5'- uCCGCGGCGCCcugGCCgccauccagaGCACGgucgagcaGGcCACCGa -3' miRNA: 3'- -GGCGUCGUGG---UGGa---------UGUGC--------CC-GUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 48155 | 0.66 | 0.755481 |
Target: 5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3' miRNA: 3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 4359 | 0.66 | 0.755481 |
Target: 5'- gCGCAG-ACCACagguagGCGCGGcagucgcgcGCGCCGg -3' miRNA: 3'- gGCGUCgUGGUGga----UGUGCC---------CGUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 64116 | 0.66 | 0.764805 |
Target: 5'- gCGcCAGgACCACCggguC-CGGGC-CCGg -3' miRNA: 3'- gGC-GUCgUGGUGGau--GuGCCCGuGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 91302 | 0.66 | 0.755481 |
Target: 5'- gCCGCgugAGCACCauccuggacaGCCccgcgugcgUGCGCGGGCuCUGg -3' miRNA: 3'- -GGCG---UCGUGG----------UGG---------AUGUGCCCGuGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 32003 | 0.66 | 0.764805 |
Target: 5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3' miRNA: 3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 70760 | 0.66 | 0.764805 |
Target: 5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3' miRNA: 3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 88044 | 0.66 | 0.755481 |
Target: 5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3' miRNA: 3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 73292 | 0.66 | 0.764805 |
Target: 5'- gCCGCAcGCGCC-CCUGgGCGGcgagcaggaGCACg- -3' miRNA: 3'- -GGCGU-CGUGGuGGAUgUGCC---------CGUGgc -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 32183 | 0.66 | 0.764805 |
Target: 5'- aCGCGGCGCUAgg-GC-CGGGCAgCGc -3' miRNA: 3'- gGCGUCGUGGUggaUGuGCCCGUgGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 86262 | 0.66 | 0.762019 |
Target: 5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3' miRNA: 3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 68726 | 0.66 | 0.755481 |
Target: 5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3' miRNA: 3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 3156 | 0.66 | 0.755481 |
Target: 5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3' miRNA: 3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5' |
|||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 43590 | 0.66 | 0.755481 |
Target: 5'- gCCGCAuguucGCGCgCGCCgACGacGGCGCCGg -3' miRNA: 3'- -GGCGU-----CGUG-GUGGaUGUgcCCGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home