miRNA display CGI


Results 1 - 20 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 9422 0.77 0.213323
Target:  5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3'
miRNA:   3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 19648 0.79 0.16292
Target:  5'- uCCGCGGCggcggcgcgcGCCGCCgcgcGCGCGGGCACgGc -3'
miRNA:   3'- -GGCGUCG----------UGGUGGa---UGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 67678 0.79 0.166192
Target:  5'- uUCGCGGCGCC-CUgcggcgggugggGCGCGGGCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGuGGa-----------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 106209 0.79 0.175496
Target:  5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3'
miRNA:   3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 41546 0.78 0.188928
Target:  5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3'
miRNA:   3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 79244 0.78 0.1955
Target:  5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3'
miRNA:   3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 75718 0.78 0.198377
Target:  5'- gCGCGGCGCCuuCCUgcagaACACGGGC-CCGu -3'
miRNA:   3'- gGCGUCGUGGu-GGA-----UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 64865 0.78 0.203255
Target:  5'- gCCGCgugcuGGCGCCGCCUGaGCcGGCGCCGg -3'
miRNA:   3'- -GGCG-----UCGUGGUGGAUgUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133759 0.78 0.208237
Target:  5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 7446 0.8 0.154993
Target:  5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3'
miRNA:   3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5'
23576 5' -59.1 NC_005261.1 + 54540 0.8 0.151162
Target:  5'- gCUGCGGCGCCGCCUcgGCGGcGCGCUGc -3'
miRNA:   3'- -GGCGUCGUGGUGGAugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 46760 0.8 0.151162
Target:  5'- gCgGCGGCGCCGCUgggagGCGCGGGCgggGCCGu -3'
miRNA:   3'- -GgCGUCGUGGUGGa----UGUGCCCG---UGGC- -5'
23576 5' -59.1 NC_005261.1 + 8918 0.83 0.088364
Target:  5'- aCGCGGCGCCAgCgcagGCGCgGGGCGCCGg -3'
miRNA:   3'- gGCGUCGUGGUgGa---UGUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 108997 0.83 0.093073
Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3'
miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576 5' -59.1 NC_005261.1 + 14126 0.82 0.111487
Target:  5'- aCUGCGGUGCCggcccugugcgcGCgCUACGCGGGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG------------UG-GAUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 88992 0.82 0.111487
Target:  5'- gCCGCGGCggcgGCCgACCUGCGCgcgcuGGGCGCCGg -3'
miRNA:   3'- -GGCGUCG----UGG-UGGAUGUG-----CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 75182 0.82 0.114382
Target:  5'- aCGCGGCgcugcugcgcgACCGCCUcgcCGCGGGCGCCGg -3'
miRNA:   3'- gGCGUCG-----------UGGUGGAu--GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 6270 0.81 0.120382
Target:  5'- gCGCGGCAgcuCCACCcgguagacggGCGCGGGCACCGc -3'
miRNA:   3'- gGCGUCGU---GGUGGa---------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 62395 0.8 0.14631
Target:  5'- gCCGC-GCGCCACCUccccgggcgcggccGCGcCGGGCACCa -3'
miRNA:   3'- -GGCGuCGUGGUGGA--------------UGU-GCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 75923 0.8 0.147417
Target:  5'- aCCGCGGgGCCGCCgcgcgccCGCGcGGCGCCGa -3'
miRNA:   3'- -GGCGUCgUGGUGGau-----GUGC-CCGUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.