Results 1 - 20 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 9422 | 0.77 | 0.213323 |
Target: 5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3' miRNA: 3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 19648 | 0.79 | 0.16292 |
Target: 5'- uCCGCGGCggcggcgcgcGCCGCCgcgcGCGCGGGCACgGc -3' miRNA: 3'- -GGCGUCG----------UGGUGGa---UGUGCCCGUGgC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 67678 | 0.79 | 0.166192 |
Target: 5'- uUCGCGGCGCC-CUgcggcgggugggGCGCGGGCGCCGc -3' miRNA: 3'- -GGCGUCGUGGuGGa-----------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 106209 | 0.79 | 0.175496 |
Target: 5'- gCCGCGGCagcacgcGCUGCCgguacucgcgcggcgGCACGGGCACCGc -3' miRNA: 3'- -GGCGUCG-------UGGUGGa--------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 41546 | 0.78 | 0.188928 |
Target: 5'- gUCGcCAGUACCugCgcgGCACGGGCAUCa -3' miRNA: 3'- -GGC-GUCGUGGugGa--UGUGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 79244 | 0.78 | 0.1955 |
Target: 5'- gCGCAcCGCCGCCcguggaggccuucgACGCGGGCGCCGa -3' miRNA: 3'- gGCGUcGUGGUGGa-------------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 75718 | 0.78 | 0.198377 |
Target: 5'- gCGCGGCGCCuuCCUgcagaACACGGGC-CCGu -3' miRNA: 3'- gGCGUCGUGGu-GGA-----UGUGCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 64865 | 0.78 | 0.203255 |
Target: 5'- gCCGCgugcuGGCGCCGCCUGaGCcGGCGCCGg -3' miRNA: 3'- -GGCG-----UCGUGGUGGAUgUGcCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 133759 | 0.78 | 0.208237 |
Target: 5'- gCCGCGGCGCCGC--GCgACGGGcCGCCGc -3' miRNA: 3'- -GGCGUCGUGGUGgaUG-UGCCC-GUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 7446 | 0.8 | 0.154993 |
Target: 5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3' miRNA: 3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 54540 | 0.8 | 0.151162 |
Target: 5'- gCUGCGGCGCCGCCUcgGCGGcGCGCUGc -3' miRNA: 3'- -GGCGUCGUGGUGGAugUGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 46760 | 0.8 | 0.151162 |
Target: 5'- gCgGCGGCGCCGCUgggagGCGCGGGCgggGCCGu -3' miRNA: 3'- -GgCGUCGUGGUGGa----UGUGCCCG---UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 8918 | 0.83 | 0.088364 |
Target: 5'- aCGCGGCGCCAgCgcagGCGCgGGGCGCCGg -3' miRNA: 3'- gGCGUCGUGGUgGa---UGUG-CCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 108997 | 0.83 | 0.093073 |
Target: 5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3' miRNA: 3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 14126 | 0.82 | 0.111487 |
Target: 5'- aCUGCGGUGCCggcccugugcgcGCgCUACGCGGGCGCCGg -3' miRNA: 3'- -GGCGUCGUGG------------UG-GAUGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 88992 | 0.82 | 0.111487 |
Target: 5'- gCCGCGGCggcgGCCgACCUGCGCgcgcuGGGCGCCGg -3' miRNA: 3'- -GGCGUCG----UGG-UGGAUGUG-----CCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 75182 | 0.82 | 0.114382 |
Target: 5'- aCGCGGCgcugcugcgcgACCGCCUcgcCGCGGGCGCCGg -3' miRNA: 3'- gGCGUCG-----------UGGUGGAu--GUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 6270 | 0.81 | 0.120382 |
Target: 5'- gCGCGGCAgcuCCACCcgguagacggGCGCGGGCACCGc -3' miRNA: 3'- gGCGUCGU---GGUGGa---------UGUGCCCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 62395 | 0.8 | 0.14631 |
Target: 5'- gCCGC-GCGCCACCUccccgggcgcggccGCGcCGGGCACCa -3' miRNA: 3'- -GGCGuCGUGGUGGA--------------UGU-GCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 75923 | 0.8 | 0.147417 |
Target: 5'- aCCGCGGgGCCGCCgcgcgccCGCGcGGCGCCGa -3' miRNA: 3'- -GGCGUCgUGGUGGau-----GUGC-CCGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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