miRNA display CGI

Results 1 - 20 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	67487	0.65	0.800011
	Target:  5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	47158	0.66	0.792065
	Target:  5'- uCgGCGGCcgagACCACCa--GCGGGaCGCCc -3' miRNA:   3'- -GgCGUCG----UGGUGGaugUGCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	2316	0.66	0.792065
	Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	114817	1.09	0.001358
	Target:  5'- gCCGCAGCACCACCUACACGGGCACCGu -3' miRNA:   3'- -GGCGUCGUGGUGGAUGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	115450	0.66	0.792065
	Target:  5'- cUCGCGGCcggacuccuCCGCCUcggugucgguCGCGGGCucgGCCGc -3' miRNA:   3'- -GGCGUCGu--------GGUGGAu---------GUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	93447	0.66	0.792065
	Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3' miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	75582	0.66	0.792065
	Target:  5'- gCgGCGGCGCgGCgCU-CGCGcGCGCCGc -3' miRNA:   3'- -GgCGUCGUGgUG-GAuGUGCcCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	62882	0.66	0.792065
	Target:  5'- gCGCGGCGCaGCCcGCGCGaGGCGg-- -3' miRNA:   3'- gGCGUCGUGgUGGaUGUGC-CCGUggc -5'
23576	5'	-59.1	NC_005261.1	+	17167	0.66	0.792065
	Target:  5'- cCCGCGGCGCgGgcgugggcagcCCUGC-CGcGGCGgCGa -3' miRNA:   3'- -GGCGUCGUGgU-----------GGAUGuGC-CCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	75220	0.66	0.792065
	Target:  5'- -gGCGGCGCUGCaguccaGCGGGCGCa- -3' miRNA:   3'- ggCGUCGUGGUGgaug--UGCCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	132159	0.66	0.792065
	Target:  5'- -aGC-GCGCCGCCgcugcaggcaGCGCGGGCGggggcCCGc -3' miRNA:   3'- ggCGuCGUGGUGGa---------UGUGCCCGU-----GGC- -5'
23576	5'	-59.1	NC_005261.1	+	27454	0.66	0.792065
	Target:  5'- -gGCGGCggGCCGCCccgcgGgGCGGGCAggcccuccCCGg -3' miRNA:   3'- ggCGUCG--UGGUGGa----UgUGCCCGU--------GGC- -5'
23576	5'	-59.1	NC_005261.1	+	127761	0.65	0.799134
	Target:  5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA:   3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	128310	0.66	0.792065
	Target:  5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3' miRNA:   3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	77039	0.66	0.795611
	Target:  5'- gCCGCGcGCGCggcccucggcgaccgCGCCUggccggugccGCGCGaGGCGCUGg -3' miRNA:   3'- -GGCGU-CGUG---------------GUGGA----------UGUGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	32129	0.66	0.792065
	Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	126506	0.66	0.792065
	Target:  5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3' miRNA:   3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	6334	0.66	0.792065
	Target:  5'- gCCGC-GUACCcCCUGCccacCGGccucGCGCCGg -3' miRNA:   3'- -GGCGuCGUGGuGGAUGu---GCC----CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	117736	0.66	0.792065
	Target:  5'- gCCGCgcgcuGGCGCCGCCgcccccaACGCGacucGGguCCGg -3' miRNA:   3'- -GGCG-----UCGUGGUGGa------UGUGC----CCguGGC- -5'
23576	5'	-59.1	NC_005261.1	+	87405	0.66	0.792065
	Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3' miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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