miRNA display CGI

Results 1 - 20 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	114817	1.09	0.001358
	Target:  5'- gCCGCAGCACCACCUACACGGGCACCGu -3' miRNA:   3'- -GGCGUCGUGGUGGAUGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	107059	0.87	0.052252
	Target:  5'- aCCGcCAGCAUCugCUGCcCGGGCACCGg -3' miRNA:   3'- -GGC-GUCGUGGugGAUGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	71176	0.84	0.079619
	Target:  5'- cCCGCGcGCGcCCGCCUACACGGGCggGCUGg -3' miRNA:   3'- -GGCGU-CGU-GGUGGAUGUGCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	102934	0.84	0.081938
	Target:  5'- gCGCAGCGCCGCCgccgcugcggcggcgGcCGCGGGCGCCGc -3' miRNA:   3'- gGCGUCGUGGUGGa--------------U-GUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	8918	0.83	0.088364
	Target:  5'- aCGCGGCGCCAgCgcagGCGCgGGGCGCCGg -3' miRNA:   3'- gGCGUCGUGGUgGa---UGUG-CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	4480	0.83	0.093073
	Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3' miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576	5'	-59.1	NC_005261.1	+	108997	0.83	0.093073
	Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3' miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576	5'	-59.1	NC_005261.1	+	14126	0.82	0.111487
	Target:  5'- aCUGCGGUGCCggcccugugcgcGCgCUACGCGGGCGCCGg -3' miRNA:   3'- -GGCGUCGUGG------------UG-GAUGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	88992	0.82	0.111487
	Target:  5'- gCCGCGGCggcgGCCgACCUGCGCgcgcuGGGCGCCGg -3' miRNA:   3'- -GGCGUCG----UGG-UGGAUGUG-----CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	75182	0.82	0.114382
	Target:  5'- aCGCGGCgcugcugcgcgACCGCCUcgcCGCGGGCGCCGg -3' miRNA:   3'- gGCGUCG-----------UGGUGGAu--GUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	87060	0.81	0.117346
	Target:  5'- aCGCAGCGCCACCgcgGC-CGGGC-CCa -3' miRNA:   3'- gGCGUCGUGGUGGa--UGuGCCCGuGGc -5'
23576	5'	-59.1	NC_005261.1	+	6270	0.81	0.120382
	Target:  5'- gCGCGGCAgcuCCACCcgguagacggGCGCGGGCACCGc -3' miRNA:   3'- gGCGUCGU---GGUGGa---------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	107668	0.81	0.129603
	Target:  5'- uCCGCGGCcccgccgggcguuGCCGCCgcgGCGgGGGCGCCGc -3' miRNA:   3'- -GGCGUCG-------------UGGUGGa--UGUgCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	62395	0.8	0.14631
	Target:  5'- gCCGC-GCGCCACCUccccgggcgcggccGCGcCGGGCACCa -3' miRNA:   3'- -GGCGuCGUGGUGGA--------------UGU-GCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	75923	0.8	0.147417
	Target:  5'- aCCGCGGgGCCGCCgcgcgccCGCGcGGCGCCGa -3' miRNA:   3'- -GGCGUCgUGGUGGau-----GUGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	93916	0.8	0.147417
	Target:  5'- gCGCGGCGCCcgcgggcuugcGCCgucCGCGGGCGCCGc -3' miRNA:   3'- gGCGUCGUGG-----------UGGau-GUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	58327	0.8	0.151162
	Target:  5'- gCCGCccgAGCACCGCCU-CGCGGagccGCGCCGg -3' miRNA:   3'- -GGCG---UCGUGGUGGAuGUGCC----CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	54540	0.8	0.151162
	Target:  5'- gCUGCGGCGCCGCCUcgGCGGcGCGCUGc -3' miRNA:   3'- -GGCGUCGUGGUGGAugUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	46760	0.8	0.151162
	Target:  5'- gCgGCGGCGCCGCUgggagGCGCGGGCgggGCCGu -3' miRNA:   3'- -GgCGUCGUGGUGGa----UGUGCCCG---UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	7446	0.8	0.154993
	Target:  5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3' miRNA:   3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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