miRNA display CGI


Results 1 - 20 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 67487 0.65 0.800011
Target:  5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 36836 0.65 0.800011
Target:  5'- -aGCGGCGCUG-CUGCugGcggccguggaggaGGCGCCGg -3'
miRNA:   3'- ggCGUCGUGGUgGAUGugC-------------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 127761 0.65 0.799134
Target:  5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3'
miRNA:   3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 77039 0.66 0.795611
Target:  5'- gCCGCGcGCGCggcccucggcgaccgCGCCUggccggugccGCGCGaGGCGCUGg -3'
miRNA:   3'- -GGCGU-CGUG---------------GUGGA----------UGUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 7660 0.66 0.792065
Target:  5'- gCGCGGCGgCGCUUccGCccgGCGGGcCGCCc -3'
miRNA:   3'- gGCGUCGUgGUGGA--UG---UGCCC-GUGGc -5'
23576 5' -59.1 NC_005261.1 + 110851 0.66 0.792065
Target:  5'- gCCGC-GUACCcCCUGCccacCGGccucGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGGuGGAUGu---GCC----CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 9037 0.66 0.792065
Target:  5'- -aGCAGCugCGCC-ACGCGcuGGcCugCGg -3'
miRNA:   3'- ggCGUCGugGUGGaUGUGC--CC-GugGC- -5'
23576 5' -59.1 NC_005261.1 + 87819 0.66 0.792065
Target:  5'- -aGCGGC-CCGCg-ACGCGgGGCuGCCGg -3'
miRNA:   3'- ggCGUCGuGGUGgaUGUGC-CCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 29329 0.66 0.792065
Target:  5'- cCCGC-GCcCCGCUcGCcgGCGGGCAgCGc -3'
miRNA:   3'- -GGCGuCGuGGUGGaUG--UGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 30941 0.66 0.792065
Target:  5'- gCCGCGGCggagugccuGCCGCCUgauGCGCGccCGCCc -3'
miRNA:   3'- -GGCGUCG---------UGGUGGA---UGUGCccGUGGc -5'
23576 5' -59.1 NC_005261.1 + 94556 0.66 0.792065
Target:  5'- gCCGUGGaGCCG-CUGCAUGGGCGacUCGa -3'
miRNA:   3'- -GGCGUCgUGGUgGAUGUGCCCGU--GGC- -5'
23576 5' -59.1 NC_005261.1 + 49123 0.66 0.792065
Target:  5'- gCGCAGUGCCACgcGCGCGccagcGCGCCc -3'
miRNA:   3'- gGCGUCGUGGUGgaUGUGCc----CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 26146 0.66 0.792065
Target:  5'- aCCGC-GCACCACgugGCGCccucgccgacgaGGGCACg- -3'
miRNA:   3'- -GGCGuCGUGGUGga-UGUG------------CCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 17265 0.66 0.792065
Target:  5'- gCgGCGGCACgCGCCc-CGCGgGGCGCg- -3'
miRNA:   3'- -GgCGUCGUG-GUGGauGUGC-CCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 65094 0.66 0.792065
Target:  5'- -gGCGGCGCgaGCCcgGCcCGGGgACCGc -3'
miRNA:   3'- ggCGUCGUGg-UGGa-UGuGCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 93512 0.66 0.792065
Target:  5'- gCUGCAGCGC--CCUGCGCGcGUcaGCCGu -3'
miRNA:   3'- -GGCGUCGUGguGGAUGUGCcCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 92526 0.66 0.792065
Target:  5'- gUCGCGGaACC-CCUGCGCggcgagGGGC-CCGu -3'
miRNA:   3'- -GGCGUCgUGGuGGAUGUG------CCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 106833 0.66 0.792065
Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3'
miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576 5' -59.1 NC_005261.1 + 8287 0.66 0.792065
Target:  5'- gCUGCAgauGUACCACUcgg-UGGGCGCCGu -3'
miRNA:   3'- -GGCGU---CGUGGUGGauguGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 73447 0.66 0.792065
Target:  5'- gCGCuGCGCCGCacguCGUGGcGCGCCGc -3'
miRNA:   3'- gGCGuCGUGGUGgau-GUGCC-CGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.