Results 21 - 40 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 128310 | 0.66 | 0.792065 |
Target: 5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3' miRNA: 3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 7660 | 0.66 | 0.792065 |
Target: 5'- gCGCGGCGgCGCUUccGCccgGCGGGcCGCCc -3' miRNA: 3'- gGCGUCGUgGUGGA--UG---UGCCC-GUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 92526 | 0.66 | 0.792065 |
Target: 5'- gUCGCGGaACC-CCUGCGCggcgagGGGC-CCGu -3' miRNA: 3'- -GGCGUCgUGGuGGAUGUG------CCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 86566 | 0.66 | 0.792065 |
Target: 5'- aUGCAGCucgcgGCCACUaGCgugccgaagGCGGGC-CCGg -3' miRNA: 3'- gGCGUCG-----UGGUGGaUG---------UGCCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 27454 | 0.66 | 0.792065 |
Target: 5'- -gGCGGCggGCCGCCccgcgGgGCGGGCAggcccuccCCGg -3' miRNA: 3'- ggCGUCG--UGGUGGa----UgUGCCCGU--------GGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 29329 | 0.66 | 0.792065 |
Target: 5'- cCCGC-GCcCCGCUcGCcgGCGGGCAgCGc -3' miRNA: 3'- -GGCGuCGuGGUGGaUG--UGCCCGUgGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 13768 | 0.66 | 0.792065 |
Target: 5'- aCGUgGGCGCC-CCUGa--GGGCACCc -3' miRNA: 3'- gGCG-UCGUGGuGGAUgugCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 126506 | 0.66 | 0.792065 |
Target: 5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3' miRNA: 3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 92962 | 0.66 | 0.792065 |
Target: 5'- aCgGCAGCACgGCg---GCGGGCACgGu -3' miRNA: 3'- -GgCGUCGUGgUGgaugUGCCCGUGgC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 9037 | 0.66 | 0.792065 |
Target: 5'- -aGCAGCugCGCC-ACGCGcuGGcCugCGg -3' miRNA: 3'- ggCGUCGugGUGGaUGUGC--CC-GugGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 132159 | 0.66 | 0.792065 |
Target: 5'- -aGC-GCGCCGCCgcugcaggcaGCGCGGGCGggggcCCGc -3' miRNA: 3'- ggCGuCGUGGUGGa---------UGUGCCCGU-----GGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 32129 | 0.66 | 0.792065 |
Target: 5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA: 3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 136647 | 0.66 | 0.792065 |
Target: 5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA: 3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 110851 | 0.66 | 0.792065 |
Target: 5'- gCCGC-GUACCcCCUGCccacCGGccucGCGCCGg -3' miRNA: 3'- -GGCGuCGUGGuGGAUGu---GCC----CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 62882 | 0.66 | 0.792065 |
Target: 5'- gCGCGGCGCaGCCcGCGCGaGGCGg-- -3' miRNA: 3'- gGCGUCGUGgUGGaUGUGC-CCGUggc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 65094 | 0.66 | 0.792065 |
Target: 5'- -gGCGGCGCgaGCCcgGCcCGGGgACCGc -3' miRNA: 3'- ggCGUCGUGg-UGGa-UGuGCCCgUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 30941 | 0.66 | 0.792065 |
Target: 5'- gCCGCGGCggagugccuGCCGCCUgauGCGCGccCGCCc -3' miRNA: 3'- -GGCGUCG---------UGGUGGA---UGUGCccGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 122577 | 0.66 | 0.792065 |
Target: 5'- cCUGgAGCACCAgCUcccgGC-CGGGCGgCGc -3' miRNA: 3'- -GGCgUCGUGGUgGA----UGuGCCCGUgGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 132563 | 0.66 | 0.792065 |
Target: 5'- gCGCAGUACgGCUgcgaagACGuCGGcGCGCCc -3' miRNA: 3'- gGCGUCGUGgUGGa-----UGU-GCC-CGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 117736 | 0.66 | 0.792065 |
Target: 5'- gCCGCgcgcuGGCGCCGCCgcccccaACGCGacucGGguCCGg -3' miRNA: 3'- -GGCG-----UCGUGGUGGa------UGUGC----CCguGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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