miRNA display CGI


Results 21 - 40 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 8287 0.66 0.792065
Target:  5'- gCUGCAgauGUACCACUcgg-UGGGCGCCGu -3'
miRNA:   3'- -GGCGU---CGUGGUGGauguGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87405 0.66 0.792065
Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 32129 0.66 0.792065
Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3'
miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 106833 0.66 0.792065
Target:  5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3'
miRNA:   3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5'
23576 5' -59.1 NC_005261.1 + 92962 0.66 0.792065
Target:  5'- aCgGCAGCACgGCg---GCGGGCACgGu -3'
miRNA:   3'- -GgCGUCGUGgUGgaugUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 62882 0.66 0.792065
Target:  5'- gCGCGGCGCaGCCcGCGCGaGGCGg-- -3'
miRNA:   3'- gGCGUCGUGgUGGaUGUGC-CCGUggc -5'
23576 5' -59.1 NC_005261.1 + 126506 0.66 0.792065
Target:  5'- gCCGCAG-GCgGUCUGCcUGGGCGCCc -3'
miRNA:   3'- -GGCGUCgUGgUGGAUGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 74763 0.66 0.792065
Target:  5'- uCCGCu-CGCCGugcaacCCU-CGCGGGCGCuCGg -3'
miRNA:   3'- -GGCGucGUGGU------GGAuGUGCCCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 13768 0.66 0.792065
Target:  5'- aCGUgGGCGCC-CCUGa--GGGCACCc -3'
miRNA:   3'- gGCG-UCGUGGuGGAUgugCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 132159 0.66 0.792065
Target:  5'- -aGC-GCGCCGCCgcugcaggcaGCGCGGGCGggggcCCGc -3'
miRNA:   3'- ggCGuCGUGGUGGa---------UGUGCCCGU-----GGC- -5'
23576 5' -59.1 NC_005261.1 + 94556 0.66 0.792065
Target:  5'- gCCGUGGaGCCG-CUGCAUGGGCGacUCGa -3'
miRNA:   3'- -GGCGUCgUGGUgGAUGUGCCCGU--GGC- -5'
23576 5' -59.1 NC_005261.1 + 75582 0.66 0.792065
Target:  5'- gCgGCGGCGCgGCgCU-CGCGcGCGCCGc -3'
miRNA:   3'- -GgCGUCGUGgUG-GAuGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 128310 0.66 0.792065
Target:  5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3'
miRNA:   3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 132563 0.66 0.792065
Target:  5'- gCGCAGUACgGCUgcgaagACGuCGGcGCGCCc -3'
miRNA:   3'- gGCGUCGUGgUGGa-----UGU-GCC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 122577 0.66 0.792065
Target:  5'- cCUGgAGCACCAgCUcccgGC-CGGGCGgCGc -3'
miRNA:   3'- -GGCgUCGUGGUgGA----UGuGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 93447 0.66 0.792065
Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3'
miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 136647 0.66 0.792065
Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3'
miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 29329 0.66 0.792065
Target:  5'- cCCGC-GCcCCGCUcGCcgGCGGGCAgCGc -3'
miRNA:   3'- -GGCGuCGuGGUGGaUG--UGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 93512 0.66 0.792065
Target:  5'- gCUGCAGCGC--CCUGCGCGcGUcaGCCGu -3'
miRNA:   3'- -GGCGUCGUGguGGAUGUGCcCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 86566 0.66 0.792065
Target:  5'- aUGCAGCucgcgGCCACUaGCgugccgaagGCGGGC-CCGg -3'
miRNA:   3'- gGCGUCG-----UGGUGGaUG---------UGCCCGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.