miRNA display CGI

Results 21 - 40 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	11428	0.66	0.774016
	Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3' miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	39219	0.66	0.764805
	Target:  5'- gCCGCcGCGCCGCCgcuCGCGa-CGCUGa -3' miRNA:   3'- -GGCGuCGUGGUGGau-GUGCccGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	76581	0.66	0.774016
	Target:  5'- gCCGCucGGCucaguCCGCCgGCggACGGGCGgCCa -3' miRNA:   3'- -GGCG--UCGu----GGUGGaUG--UGCCCGU-GGc -5'
23576	5'	-59.1	NC_005261.1	+	90281	0.66	0.764805
	Target:  5'- gCGCAGCgugaACgCGCUcGCGCGcGGCGCgCGg -3' miRNA:   3'- gGCGUCG----UG-GUGGaUGUGC-CCGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	22702	0.66	0.768503
	Target:  5'- gCCGCcgauGCugCGCUcggugcagcagguggUGCGgGGGCugCGg -3' miRNA:   3'- -GGCGu---CGugGUGG---------------AUGUgCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	88044	0.66	0.755481
	Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3' miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	53232	0.66	0.764805
	Target:  5'- cCCGCGGCcguCAUgcACugGGuGCGCCGg -3' miRNA:   3'- -GGCGUCGug-GUGgaUGugCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	19748	0.66	0.770346
	Target:  5'- uCCGCAGCGCCGCaUACcggcagaucuuguaAUGGcaagugucuucuaGCGCCGc -3' miRNA:   3'- -GGCGUCGUGGUGgAUG--------------UGCC-------------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	105700	0.66	0.774016
	Target:  5'- gCCGCGGCcgggGCCgggGCCggGCGCGGcGCggaccccccGCCGa -3' miRNA:   3'- -GGCGUCG----UGG---UGGa-UGUGCC-CG---------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	81416	0.66	0.764805
	Target:  5'- gCCGCGGCACCAggaACAcCGuGGC-CCGc -3' miRNA:   3'- -GGCGUCGUGGUggaUGU-GC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	70760	0.66	0.764805
	Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3' miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	91302	0.66	0.755481
	Target:  5'- gCCGCgugAGCACCauccuggacaGCCccgcgugcgUGCGCGGGCuCUGg -3' miRNA:   3'- -GGCG---UCGUGG----------UGG---------AUGUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	28992	0.66	0.764805
	Target:  5'- cCCGCAcuGgGCCGCgCUgcagcGCGCGGcGUGCCGc -3' miRNA:   3'- -GGCGU--CgUGGUG-GA-----UGUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	19810	0.66	0.764805
	Target:  5'- uCCGCGGCGgCgacaGCCaGCGCGgcugcGGCGCCc -3' miRNA:   3'- -GGCGUCGUgG----UGGaUGUGC-----CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	92830	0.66	0.774016
	Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3' miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	48155	0.66	0.755481
	Target:  5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3' miRNA:   3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	32003	0.66	0.764805
	Target:  5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3' miRNA:   3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	30211	0.66	0.774016
	Target:  5'- aCGCGGacguGCUGCCgcUGCugGGGCugCc -3' miRNA:   3'- gGCGUCg---UGGUGG--AUGugCCCGugGc -5'
23576	5'	-59.1	NC_005261.1	+	123037	0.66	0.764805
	Target:  5'- aCCGCgcgauGGCGgCGuuUccCGCGGGCGCCGc -3' miRNA:   3'- -GGCG-----UCGUgGUggAu-GUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	107186	0.66	0.764805
	Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3' miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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