miRNA display CGI


Results 21 - 40 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 30211 0.66 0.774016
Target:  5'- aCGCGGacguGCUGCCgcUGCugGGGCugCc -3'
miRNA:   3'- gGCGUCg---UGGUGG--AUGugCCCGugGc -5'
23576 5' -59.1 NC_005261.1 + 117946 0.66 0.752663
Target:  5'- gCCGCAagcGCGCCcCCgcgACACGacccggcgguucucGGCGCCc -3'
miRNA:   3'- -GGCGU---CGUGGuGGa--UGUGC--------------CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 3156 0.66 0.755481
Target:  5'- gCCGCgAGCccGCCGCCggaaaGCgGCGGGcCGCUGc -3'
miRNA:   3'- -GGCG-UCG--UGGUGGa----UG-UGCCC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 81416 0.66 0.764805
Target:  5'- gCCGCGGCACCAggaACAcCGuGGC-CCGc -3'
miRNA:   3'- -GGCGUCGUGGUggaUGU-GC-CCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 73292 0.66 0.764805
Target:  5'- gCCGCAcGCGCC-CCUGgGCGGcgagcaggaGCACg- -3'
miRNA:   3'- -GGCGU-CGUGGuGGAUgUGCC---------CGUGgc -5'
23576 5' -59.1 NC_005261.1 + 88044 0.66 0.755481
Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3'
miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 38047 0.66 0.755481
Target:  5'- aCGCuGCcCCGCCgcCACGGcGUugCGu -3'
miRNA:   3'- gGCGuCGuGGUGGauGUGCC-CGugGC- -5'
23576 5' -59.1 NC_005261.1 + 43590 0.66 0.755481
Target:  5'- gCCGCAuguucGCGCgCGCCgACGacGGCGCCGg -3'
miRNA:   3'- -GGCGU-----CGUG-GUGGaUGUgcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 107186 0.66 0.764805
Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 70760 0.66 0.764805
Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3'
miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 48155 0.66 0.755481
Target:  5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3'
miRNA:   3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 19810 0.66 0.764805
Target:  5'- uCCGCGGCGgCgacaGCCaGCGCGgcugcGGCGCCc -3'
miRNA:   3'- -GGCGUCGUgG----UGGaUGUGC-----CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 38106 0.66 0.774016
Target:  5'- gCgGgGGCugCgGCCgguGCGGGCGCCGc -3'
miRNA:   3'- -GgCgUCGugG-UGGaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 37092 0.66 0.755481
Target:  5'- gCCGCcGCGCggcaGCCUcGCGCgaggaccacgaGGGCGCCa -3'
miRNA:   3'- -GGCGuCGUGg---UGGA-UGUG-----------CCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 32003 0.66 0.764805
Target:  5'- gCGCGGCgGCCgcGCCaggcggcCGCGGGCGCUu -3'
miRNA:   3'- gGCGUCG-UGG--UGGau-----GUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 83185 0.66 0.764805
Target:  5'- cUCGcCGGCcCCGCgcagCUGCGCGGG-GCCGg -3'
miRNA:   3'- -GGC-GUCGuGGUG----GAUGUGCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 4359 0.66 0.755481
Target:  5'- gCGCAG-ACCACagguagGCGCGGcagucgcgcGCGCCGg -3'
miRNA:   3'- gGCGUCgUGGUGga----UGUGCC---------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 68726 0.66 0.755481
Target:  5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3'
miRNA:   3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 67331 0.66 0.764805
Target:  5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3'
miRNA:   3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 13321 0.66 0.764805
Target:  5'- uCCGCGGCuucCCGCgUggcgGCGgGGGCGgCCa -3'
miRNA:   3'- -GGCGUCGu--GGUGgA----UGUgCCCGU-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.