miRNA display CGI


Results 1 - 20 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 114817 1.09 0.001358
Target:  5'- gCCGCAGCACCACCUACACGGGCACCGu -3'
miRNA:   3'- -GGCGUCGUGGUGGAUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 107059 0.87 0.052252
Target:  5'- aCCGcCAGCAUCugCUGCcCGGGCACCGg -3'
miRNA:   3'- -GGC-GUCGUGGugGAUGuGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 102934 0.84 0.081938
Target:  5'- gCGCAGCGCCGCCgccgcugcggcggcgGcCGCGGGCGCCGc -3'
miRNA:   3'- gGCGUCGUGGUGGa--------------U-GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 71176 0.84 0.079619
Target:  5'- cCCGCGcGCGcCCGCCUACACGGGCggGCUGg -3'
miRNA:   3'- -GGCGU-CGU-GGUGGAUGUGCCCG--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 108997 0.83 0.093073
Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3'
miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576 5' -59.1 NC_005261.1 + 8918 0.83 0.088364
Target:  5'- aCGCGGCGCCAgCgcagGCGCgGGGCGCCGg -3'
miRNA:   3'- gGCGUCGUGGUgGa---UGUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 4480 0.83 0.093073
Target:  5'- gCGCGGCGCCgcggcguaGCCUGCGCGGGCcCCa -3'
miRNA:   3'- gGCGUCGUGG--------UGGAUGUGCCCGuGGc -5'
23576 5' -59.1 NC_005261.1 + 88992 0.82 0.111487
Target:  5'- gCCGCGGCggcgGCCgACCUGCGCgcgcuGGGCGCCGg -3'
miRNA:   3'- -GGCGUCG----UGG-UGGAUGUG-----CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 14126 0.82 0.111487
Target:  5'- aCUGCGGUGCCggcccugugcgcGCgCUACGCGGGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG------------UG-GAUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 75182 0.82 0.114382
Target:  5'- aCGCGGCgcugcugcgcgACCGCCUcgcCGCGGGCGCCGg -3'
miRNA:   3'- gGCGUCG-----------UGGUGGAu--GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87060 0.81 0.117346
Target:  5'- aCGCAGCGCCACCgcgGC-CGGGC-CCa -3'
miRNA:   3'- gGCGUCGUGGUGGa--UGuGCCCGuGGc -5'
23576 5' -59.1 NC_005261.1 + 107668 0.81 0.129603
Target:  5'- uCCGCGGCcccgccgggcguuGCCGCCgcgGCGgGGGCGCCGc -3'
miRNA:   3'- -GGCGUCG-------------UGGUGGa--UGUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 6270 0.81 0.120382
Target:  5'- gCGCGGCAgcuCCACCcgguagacggGCGCGGGCACCGc -3'
miRNA:   3'- gGCGUCGU---GGUGGa---------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 7446 0.8 0.154993
Target:  5'- uCCGCGGUGCgGCCaGCGCGGGgCGCCa -3'
miRNA:   3'- -GGCGUCGUGgUGGaUGUGCCC-GUGGc -5'
23576 5' -59.1 NC_005261.1 + 58327 0.8 0.151162
Target:  5'- gCCGCccgAGCACCGCCU-CGCGGagccGCGCCGg -3'
miRNA:   3'- -GGCG---UCGUGGUGGAuGUGCC----CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 62395 0.8 0.14631
Target:  5'- gCCGC-GCGCCACCUccccgggcgcggccGCGcCGGGCACCa -3'
miRNA:   3'- -GGCGuCGUGGUGGA--------------UGU-GCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 75923 0.8 0.147417
Target:  5'- aCCGCGGgGCCGCCgcgcgccCGCGcGGCGCCGa -3'
miRNA:   3'- -GGCGUCgUGGUGGau-----GUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 46760 0.8 0.151162
Target:  5'- gCgGCGGCGCCGCUgggagGCGCGGGCgggGCCGu -3'
miRNA:   3'- -GgCGUCGUGGUGGa----UGUGCCCG---UGGC- -5'
23576 5' -59.1 NC_005261.1 + 93916 0.8 0.147417
Target:  5'- gCGCGGCGCCcgcgggcuugcGCCgucCGCGGGCGCCGc -3'
miRNA:   3'- gGCGUCGUGG-----------UGGau-GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 54540 0.8 0.151162
Target:  5'- gCUGCGGCGCCGCCUcgGCGGcGCGCUGc -3'
miRNA:   3'- -GGCGUCGUGGUGGAugUGCC-CGUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.