miRNA display CGI

Results 1 - 20 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	138104	0.77	0.234746
	Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3' miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	138036	0.72	0.41904
	Target:  5'- gCgGCGGCACCGCUggccccgggaGCACcagGGGCGCCa -3' miRNA:   3'- -GgCGUCGUGGUGGa---------UGUG---CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	137980	0.77	0.234746
	Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137884	0.7	0.516526
	Target:  5'- gCCaGCGGUGCCGCCgccgccccuggugcuCGCGGGCcCCGc -3' miRNA:   3'- -GG-CGUCGUGGUGGau-------------GUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137868	0.71	0.481651
	Target:  5'- aCCGCcGcCACCGCCgccgggccGCGcCGGGCugCGg -3' miRNA:   3'- -GGCGuC-GUGGUGGa-------UGU-GCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	137787	0.68	0.657928
	Target:  5'- cCCG-GGCcccGCCGCCcGCGCcGGCGCCGc -3' miRNA:   3'- -GGCgUCG---UGGUGGaUGUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137677	0.66	0.774016
	Target:  5'- cCCGgGGCcccccACCGCCccucgUGCAgCGGGCcCCGc -3' miRNA:   3'- -GGCgUCG-----UGGUGG-----AUGU-GCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137593	0.7	0.567123
	Target:  5'- aCGCGGCgcuggcggccgccGCCAcauccCCUGCGuCGGGCACUc -3' miRNA:   3'- gGCGUCG-------------UGGU-----GGAUGU-GCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	137266	0.69	0.597896
	Target:  5'- gCGCGGC-CCGCCgcucUACGGGC-UCGg -3' miRNA:   3'- gGCGUCGuGGUGGau--GUGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	137055	0.69	0.578004
	Target:  5'- aCCGUcggcaGGCGCgGag-GCGCGGGCACCc -3' miRNA:   3'- -GGCG-----UCGUGgUggaUGUGCCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	136935	0.72	0.454233
	Target:  5'- gCCGCcggcgacgggAGCcCCGCCgGCcUGGGCGCCGg -3' miRNA:   3'- -GGCG----------UCGuGGUGGaUGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136843	0.69	0.626897
	Target:  5'- gCCGCGGCGCCcggcgugGCCUgggACGCggaccaGGGC-CCGc -3' miRNA:   3'- -GGCGUCGUGG-------UGGA---UGUG------CCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136789	0.77	0.223817
	Target:  5'- gCCGaGGCGCCGCCgcuggugcuggAgGCGGGCGCCGc -3' miRNA:   3'- -GGCgUCGUGGUGGa----------UgUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136744	0.71	0.46328
	Target:  5'- gCCGCGGCggugGCCuuCUGCGCGGccGCGCUGc -3' miRNA:   3'- -GGCGUCG----UGGugGAUGUGCC--CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136687	0.71	0.472421
	Target:  5'- gCCGguGUACCugGCCUGCGgGcGGCGCgCGc -3' miRNA:   3'- -GGCguCGUGG--UGGAUGUgC-CCGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	136647	0.66	0.792065
	Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3' miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136511	0.72	0.427684
	Target:  5'- aCCGCGGUGCCcguGCCgccGCGCGaGUACCGg -3' miRNA:   3'- -GGCGUCGUGG---UGGa--UGUGCcCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136461	0.75	0.275914
	Target:  5'- gCCGCGGCGCCAacgugcgCUACACGGuggccacGCGCCu -3' miRNA:   3'- -GGCGUCGUGGUg------GAUGUGCC-------CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	136461	0.67	0.70747
	Target:  5'- aCGCGGCAgccCCAgaCUcgcGCGCGGGCAgCa -3' miRNA:   3'- gGCGUCGU---GGUg-GA---UGUGCCCGUgGc -5'
23576	5'	-59.1	NC_005261.1	+	136423	0.71	0.500368
	Target:  5'- gCCGCAGUcgcagGCCcCCU-CGCGGGCGUCGc -3' miRNA:   3'- -GGCGUCG-----UGGuGGAuGUGCCCGUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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