miRNA display CGI

Results 21 - 40 of 1223 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	136403	0.69	0.575031
	Target:  5'- gCGCGcGCcgagGCCGCUUACGCgcggcucuaccccgGGGCGCCGc -3' miRNA:   3'- gGCGU-CG----UGGUGGAUGUG--------------CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136298	0.71	0.46328
	Target:  5'- gCCGCGGUGCUGCCcgcgGCGCaGuGCGCCGc -3' miRNA:   3'- -GGCGUCGUGGUGGa---UGUGcC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136069	0.67	0.736529
	Target:  5'- cUCGCAcGCcuggGCCGgguCCUGgACGGGCgcGCCGg -3' miRNA:   3'- -GGCGU-CG----UGGU---GGAUgUGCCCG--UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	136003	0.71	0.481651
	Target:  5'- gCCGguGCGCggcgggcucucgCACCUGCuCGcGGCGCUGg -3' miRNA:   3'- -GGCguCGUG------------GUGGAUGuGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135958	0.71	0.472421
	Target:  5'- -gGCGGCGCCGCCcgGCgaggACGaGCGCCGg -3' miRNA:   3'- ggCGUCGUGGUGGa-UG----UGCcCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135851	0.67	0.746053
	Target:  5'- gCCGCcagcGCGCCGCUgcggcgGCGCGuGGC-CUGg -3' miRNA:   3'- -GGCGu---CGUGGUGGa-----UGUGC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135812	0.73	0.402075
	Target:  5'- aUCGCGGC-CCGCCgccGCGCGgGGC-CCGc -3' miRNA:   3'- -GGCGUCGuGGUGGa--UGUGC-CCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135696	0.67	0.693707
	Target:  5'- gCCGCGGCGCUggcgGCCUACugccgccccgaguCGcGGCGCgGc -3' miRNA:   3'- -GGCGUCGUGG----UGGAUGu------------GC-CCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	135641	0.76	0.246119
	Target:  5'- aUGC-GCuGCUACCUGCGCGGGCGCgGg -3' miRNA:   3'- gGCGuCG-UGGUGGAUGUGCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	135436	0.77	0.234746
	Target:  5'- cUCGCA-CGCCGCCcaggcgGCGCGGGCGCUGc -3' miRNA:   3'- -GGCGUcGUGGUGGa-----UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	135396	0.66	0.774016
	Target:  5'- gCCGcCGGCccuGCCGCCcgagcucggGCugGGGCcgcCCGg -3' miRNA:   3'- -GGC-GUCG---UGGUGGa--------UGugCCCGu--GGC- -5'
23576	5'	-59.1	NC_005261.1	+	135235	0.7	0.538709
	Target:  5'- gCGCGuCGCCGCCgucuuUGCGGGCGCgCGg -3' miRNA:   3'- gGCGUcGUGGUGGau---GUGCCCGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	135226	0.66	0.783105
	Target:  5'- cCCGCGGgaGCC-CCgGCGcCGGGcCGCCa -3' miRNA:   3'- -GGCGUCg-UGGuGGaUGU-GCCC-GUGGc -5'
23576	5'	-59.1	NC_005261.1	+	134996	0.7	0.519399
	Target:  5'- gCCGgGGCGCC-CCUggcGCgGCGGGC-CCGc -3' miRNA:   3'- -GGCgUCGUGGuGGA---UG-UGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	134936	0.67	0.736529
	Target:  5'- aCCGCGGaggacgaGCCGauggGCGaGGGCGCCGg -3' miRNA:   3'- -GGCGUCg------UGGUgga-UGUgCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	134871	0.71	0.509847
	Target:  5'- cUCGCGGC-CCugaagGCCggcGCGcCGGGCGCCGc -3' miRNA:   3'- -GGCGUCGuGG-----UGGa--UGU-GCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	134794	0.68	0.687778
	Target:  5'- cCCGCGcGC-CCGCCUggACGCuGGC-CCGc -3' miRNA:   3'- -GGCGU-CGuGGUGGA--UGUGcCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	134680	0.67	0.746053
	Target:  5'- -aGCGGCGCCGCgcccgccgcgCUGCGCGccgaGGCgGCCGc -3' miRNA:   3'- ggCGUCGUGGUG----------GAUGUGC----CCG-UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	134567	0.72	0.427684
	Target:  5'- -gGCGGCGCCGCggCUGCGCaGGGCggGCCu -3' miRNA:   3'- ggCGUCGUGGUG--GAUGUG-CCCG--UGGc -5'
23576	5'	-59.1	NC_005261.1	+	134561	0.69	0.631905
	Target:  5'- gCCGCGGCcugccggccGCgGCCUGCgcuccagacgcgcuaGCGGcGCACCc -3' miRNA:   3'- -GGCGUCG---------UGgUGGAUG---------------UGCC-CGUGGc -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home