miRNA display CGI


Results 61 - 80 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 56421 0.77 0.234189
Target:  5'- uUCGCGGCGcacCCGCCUGCggaggcgGCGGcGCACCGc -3'
miRNA:   3'- -GGCGUCGU---GGUGGAUG-------UGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 33463 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 135436 0.77 0.234746
Target:  5'- cUCGCA-CGCCGCCcaggcgGCGCGGGCGCUGc -3'
miRNA:   3'- -GGCGUcGUGGUGGa-----UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 49634 0.77 0.234746
Target:  5'- aCCGUGGCGCCGCCggGC-CGGGCcUCGg -3'
miRNA:   3'- -GGCGUCGUGGUGGa-UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 33587 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 137980 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 421 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 297 0.77 0.234746
Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3'
miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 138104 0.77 0.234746
Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3'
miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 84520 0.76 0.240376
Target:  5'- gCCGCAGCugGCCGCg-GCGCGcGGCGCCc -3'
miRNA:   3'- -GGCGUCG--UGGUGgaUGUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 75336 0.76 0.240376
Target:  5'- uCCGCcccGCcCCGCCUcGCGCGGGCugCGc -3'
miRNA:   3'- -GGCGu--CGuGGUGGA-UGUGCCCGugGC- -5'
23576 5' -59.1 NC_005261.1 + 52008 0.76 0.240376
Target:  5'- gCUGCGGCACCGgCUGCcccgguuCGGcGCGCCGa -3'
miRNA:   3'- -GGCGUCGUGGUgGAUGu------GCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 69280 0.76 0.240376
Target:  5'- gCCGCccGCGCCgACCccgGCGCgGGGCGCCGg -3'
miRNA:   3'- -GGCGu-CGUGG-UGGa--UGUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 13054 0.76 0.240376
Target:  5'- gCCGCGcGCGCC-CCUGC-CGGGCGCg- -3'
miRNA:   3'- -GGCGU-CGUGGuGGAUGuGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 69480 0.76 0.240376
Target:  5'- uCCGCGGCGCC-CCg--GCGGGCGCUu -3'
miRNA:   3'- -GGCGUCGUGGuGGaugUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 135641 0.76 0.246119
Target:  5'- aUGC-GCuGCUACCUGCGCGGGCGCgGg -3'
miRNA:   3'- gGCGuCG-UGGUGGAUGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 39970 0.76 0.246119
Target:  5'- aCGCGcGCGCCGCCUgACGCGccGCACCGg -3'
miRNA:   3'- gGCGU-CGUGGUGGA-UGUGCc-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 56070 0.76 0.246119
Target:  5'- uCCGCGccGCGCUugCUgGCGCGGGCACgGu -3'
miRNA:   3'- -GGCGU--CGUGGugGA-UGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 77965 0.76 0.251975
Target:  5'- gCGCAGCACCACCUGCccccaGCGcccGUGCCGu -3'
miRNA:   3'- gGCGUCGUGGUGGAUG-----UGCc--CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 60228 0.76 0.25435
Target:  5'- gCgGCGGCugCugCUgcugcggcaggcacgGCACGGGCGCUGg -3'
miRNA:   3'- -GgCGUCGugGugGA---------------UGUGCCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.