miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 3' -56.1 NC_005261.1 + 138039 0.68 0.795152
Target:  5'- gCGGcACCGCUGGCcccgGGAGcACCaGGggCg -3'
miRNA:   3'- -GCU-UGGCGACCGa---CCUC-UGGcUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 137884 0.67 0.838524
Target:  5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3'
miRNA:   3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5'
23579 3' -56.1 NC_005261.1 + 137504 0.67 0.862337
Target:  5'- gGGACCGCgGaGgaGGGGGCCGAc--- -3'
miRNA:   3'- gCUUGGCGaC-CgaCCUCUGGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 136790 0.66 0.891131
Target:  5'- cCGAggcgccGCCGCUGGUgcUGGAGGCgGGc--- -3'
miRNA:   3'- -GCU------UGGCGACCG--ACCUCUGgCUcaag -5'
23579 3' -56.1 NC_005261.1 + 134375 0.69 0.71852
Target:  5'- gCGGcGCCGCUGGCgacgGcGAGAgCGGGaUCa -3'
miRNA:   3'- -GCU-UGGCGACCGa---C-CUCUgGCUCaAG- -5'
23579 3' -56.1 NC_005261.1 + 128634 0.66 0.869864
Target:  5'- cCGGGCCcgagGCggGGgUGGGGGCUGGGUg- -3'
miRNA:   3'- -GCUUGG----CGa-CCgACCUCUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 128104 0.67 0.84666
Target:  5'- gCGAGCgGCgcGGCgcgGGgucGGGCCGAGUg- -3'
miRNA:   3'- -GCUUGgCGa-CCGa--CC---UCUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 124896 0.71 0.616521
Target:  5'- -cGACCGCUGGCcgcGcGAGugCGAGggCg -3'
miRNA:   3'- gcUUGGCGACCGa--C-CUCugGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 121892 0.69 0.728459
Target:  5'- gGAGCCgGCgGGCaGGAGACCGGc--- -3'
miRNA:   3'- gCUUGG-CGaCCGaCCUCUGGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 121207 0.7 0.708506
Target:  5'- gGGGCCGCgGGCcGGAGACUGcAGc-- -3'
miRNA:   3'- gCUUGGCGaCCGaCCUCUGGC-UCaag -5'
23579 3' -56.1 NC_005261.1 + 119758 0.66 0.884266
Target:  5'- uGAACCGCUGGCau---ACCGccAGUUCu -3'
miRNA:   3'- gCUUGGCGACCGaccucUGGC--UCAAG- -5'
23579 3' -56.1 NC_005261.1 + 118656 0.67 0.854601
Target:  5'- cCGGGCCGC-GcGCUcGGGGCUGAGggCg -3'
miRNA:   3'- -GCUUGGCGaC-CGAcCUCUGGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 114013 1.09 0.002697
Target:  5'- gCGAACCGCUGGCUGGAGACCGAGUUCc -3'
miRNA:   3'- -GCUUGGCGACCGACCUCUGGCUCAAG- -5'
23579 3' -56.1 NC_005261.1 + 113639 0.68 0.804158
Target:  5'- aGGGCCGCcgGGaCUGGGGG-CGGGUg- -3'
miRNA:   3'- gCUUGGCGa-CC-GACCUCUgGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 111077 0.66 0.891131
Target:  5'- aGGAUCGagggcCUGGUgugGGGGGCCGGGg-- -3'
miRNA:   3'- gCUUGGC-----GACCGa--CCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 110620 0.75 0.387329
Target:  5'- cCGAGCUGC-GGCUGGAGcCCGccggcguaaAGUUCg -3'
miRNA:   3'- -GCUUGGCGaCCGACCUCuGGC---------UCAAG- -5'
23579 3' -56.1 NC_005261.1 + 104704 0.73 0.535296
Target:  5'- cCGAAgaGC-GGCUGGAcGGCCGAGggCg -3'
miRNA:   3'- -GCUUggCGaCCGACCU-CUGGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 104372 0.75 0.404353
Target:  5'- aGAacaGCCGCcGGCcGGAGGCCGAGa-- -3'
miRNA:   3'- gCU---UGGCGaCCGaCCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 98065 0.66 0.889096
Target:  5'- gGGACCGCgGGCggcggguguguccuUGGAGAauCUGGGggCg -3'
miRNA:   3'- gCUUGGCGaCCG--------------ACCUCU--GGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 97085 0.67 0.854601
Target:  5'- gGAGgCGCcGGCUGG--GCCGGGggCg -3'
miRNA:   3'- gCUUgGCGaCCGACCucUGGCUCaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.