Results 21 - 40 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 113910 | 0.76 | 0.188928 |
Target: 5'- cGCGAUgGCCGAGGcaGCG-GGCGCGGCg- -3' miRNA: 3'- -UGCUG-CGGUUCC--UGCaCCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 77028 | 0.76 | 0.203255 |
Target: 5'- cCGACGCCGAGGcCGcGcGCGCGGCccUCg -3' miRNA: 3'- uGCUGCGGUUCCuGCaC-CGCGCCG--AG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 90869 | 0.76 | 0.203255 |
Target: 5'- uACGACGCCGucugcgcgcuGGGCGacggcaUGGCGCGGCa- -3' miRNA: 3'- -UGCUGCGGUu---------CCUGC------ACCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 70439 | 0.76 | 0.208237 |
Target: 5'- gGCGGCGCCGAGG-CGgaggagGGgGCGGC-Cg -3' miRNA: 3'- -UGCUGCGGUUCCuGCa-----CCgCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 78635 | 0.76 | 0.208237 |
Target: 5'- cGCGcCGCgGAGGugGUggcGGCGCGGCa- -3' miRNA: 3'- -UGCuGCGgUUCCugCA---CCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 134186 | 0.76 | 0.208237 |
Target: 5'- ---uUGCgGAGGGCcUGGCGCGGCUCg -3' miRNA: 3'- ugcuGCGgUUCCUGcACCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 136402 | 0.75 | 0.218516 |
Target: 5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3' miRNA: 3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31885 | 0.75 | 0.218516 |
Target: 5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3' miRNA: 3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 15275 | 0.75 | 0.223817 |
Target: 5'- gGCGGCGCCGccGGGGCGcgcGGuCGCGGcCUCc -3' miRNA: 3'- -UGCUGCGGU--UCCUGCa--CC-GCGCC-GAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 36865 | 0.75 | 0.223817 |
Target: 5'- -aGGCGCCGGagcuGGACGUGGCcGCGGUg- -3' miRNA: 3'- ugCUGCGGUU----CCUGCACCG-CGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31793 | 0.75 | 0.234746 |
Target: 5'- gACGugGCCGAcugggcGGGCGUGGacCGCGGCcCg -3' miRNA: 3'- -UGCugCGGUU------CCUGCACC--GCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 69770 | 0.75 | 0.236985 |
Target: 5'- gGCGGCGCCGGGGAC-UGagccgcucccgcggcGCGCGGCg- -3' miRNA: 3'- -UGCUGCGGUUCCUGcAC---------------CGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 60691 | 0.75 | 0.236985 |
Target: 5'- gGCGGCGCCGuaccagcccggcaucGGGgGCGggGGCGCGGCg- -3' miRNA: 3'- -UGCUGCGGU---------------UCC-UGCa-CCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 98332 | 0.75 | 0.238675 |
Target: 5'- gGCGGCGCgccccgugucgacgCGGGGGCGggggugGGCGCgGGCUCu -3' miRNA: 3'- -UGCUGCG--------------GUUCCUGCa-----CCGCG-CCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31885 | 0.75 | 0.243808 |
Target: 5'- cGCGGCGgCGGGGGCGgacgcggcggcggGGcCGUGGCUCa -3' miRNA: 3'- -UGCUGCgGUUCCUGCa------------CC-GCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 51639 | 0.75 | 0.251385 |
Target: 5'- cCGACGCCAAGGAC--GGCGCcgccgccGGCUUc -3' miRNA: 3'- uGCUGCGGUUCCUGcaCCGCG-------CCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31189 | 0.75 | 0.251975 |
Target: 5'- gGCGGCcuacugccGCCccGAGGuCGcGGCGCGGCUCg -3' miRNA: 3'- -UGCUG--------CGG--UUCCuGCaCCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 117169 | 0.75 | 0.251975 |
Target: 5'- gGCGGuCGCCAAGGACcccGGCGgGGCg- -3' miRNA: 3'- -UGCU-GCGGUUCCUGca-CCGCgCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 59464 | 0.75 | 0.251975 |
Target: 5'- cGCGGCGUCGGGGggcaGCGccGGCGCGGC-Cg -3' miRNA: 3'- -UGCUGCGGUUCC----UGCa-CCGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 17631 | 0.75 | 0.251975 |
Target: 5'- cACGGCGCCGAGGcCGcaGGCGaCGGC-Ca -3' miRNA: 3'- -UGCUGCGGUUCCuGCa-CCGC-GCCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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