miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 24624 0.7 0.646485
Target:  5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3'
miRNA:   3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 31275 0.69 0.656919
Target:  5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3'
miRNA:   3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5'
23580 5' -56.4 NC_005261.1 + 56842 0.69 0.667332
Target:  5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 90787 0.69 0.677716
Target:  5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3'
miRNA:   3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 19359 0.69 0.677716
Target:  5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 34357 0.69 0.677716
Target:  5'- --gACGGGGCCGGGcGCCgCGcGGCGc- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 95097 0.69 0.688061
Target:  5'- --gGCGAGGCCGA-UGCCgaGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGGCUcACGGg-CCUGuau -5'
23580 5' -56.4 NC_005261.1 + 123157 0.69 0.698357
Target:  5'- -aUACGAGGgCGGGgcgggcGCgCGGGCGUGg -3'
miRNA:   3'- aaAUGCUCCgGCUCa-----CGgGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 30331 0.69 0.698357
Target:  5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3'
miRNA:   3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 23232 0.69 0.698357
Target:  5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 31670 0.69 0.698357
Target:  5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3'
miRNA:   3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 51464 0.68 0.708595
Target:  5'- --gACGAGGaCGucacGUGCCUGGACGa- -3'
miRNA:   3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 31556 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 136073 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 103087 0.68 0.718765
Target:  5'- --cGCGaAGGCCGGGcccaGCCCGGcCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 127485 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 6023 0.68 0.728859
Target:  5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3'
miRNA:   3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 15721 0.68 0.728859
Target:  5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3'
miRNA:   3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 22967 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 48301 0.68 0.738865
Target:  5'- --aGCGAGGCCucGGGgggcgcgucggGCCCGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGG--CUCa----------CGGGCCUGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.