miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 105758 0.66 0.856648
Target:  5'- --cGCGGGGaCCuGGGUGCUCaGGGCGc- -3'
miRNA:   3'- aaaUGCUCC-GG-CUCACGGG-CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 105124 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 103772 0.7 0.646485
Target:  5'- -gUACGGGGCCcccggcccGUGCCCGGcGCGUu -3'
miRNA:   3'- aaAUGCUCCGGcu------CACGGGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 103679 0.75 0.342298
Target:  5'- --cGCGAGGCCGAGcGCCCGuuUAUAg -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGGGCcuGUAU- -5'
23580 5' -56.4 NC_005261.1 + 103087 0.68 0.718765
Target:  5'- --cGCGaAGGCCGGGcccaGCCCGGcCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 102636 0.74 0.39156
Target:  5'- --gGCGGGGCCGGGcgcugggGUCCGGGCGa- -3'
miRNA:   3'- aaaUGCUCCGGCUCa------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 102589 0.67 0.814607
Target:  5'- --aGCGGGGCUGGG-GCUgGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGGgCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 102278 0.67 0.814607
Target:  5'- --aGCGGccuGGCCGGGcucggGCCUGGGCGc- -3'
miRNA:   3'- aaaUGCU---CCGGCUCa----CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 98362 0.71 0.583927
Target:  5'- --cGCGGccugcuGGCCGuGUGCCUGGGCGc- -3'
miRNA:   3'- aaaUGCU------CCGGCuCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 98116 0.66 0.840415
Target:  5'- --gGCGAGGCUGGGgacGCCgCGG-CAc- -3'
miRNA:   3'- aaaUGCUCCGGCUCa--CGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 97318 0.74 0.408977
Target:  5'- --cGCGGGGCCGGG-GCCCgauaGGGCAa- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGGG----CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 97258 0.76 0.319398
Target:  5'- --cGCGGGGUCGGGUGgCgGGACGUAc -3'
miRNA:   3'- aaaUGCUCCGGCUCACgGgCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 96115 0.7 0.615147
Target:  5'- --gACGAGGCCGGGcUGCugggCCGGcACAUc -3'
miRNA:   3'- aaaUGCUCCGGCUC-ACG----GGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 95097 0.69 0.688061
Target:  5'- --gGCGAGGCCGA-UGCCgaGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGGCUcACGGg-CCUGuau -5'
23580 5' -56.4 NC_005261.1 + 94822 0.66 0.848634
Target:  5'- --gGCgGAGGCCGcccccGGcGCCUGGACGg- -3'
miRNA:   3'- aaaUG-CUCCGGC-----UCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 90787 0.69 0.677716
Target:  5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3'
miRNA:   3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 90398 0.66 0.856648
Target:  5'- --gGCGGGGCUG-GcGCCCGGcGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCuCaCGGGCC-UGUau -5'
23580 5' -56.4 NC_005261.1 + 82490 0.65 0.861355
Target:  5'- ---uCGAGGCCGuccggcagcacGCCCGcGACAUAg -3'
miRNA:   3'- aaauGCUCCGGCuca--------CGGGC-CUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 79905 0.7 0.604717
Target:  5'- --cGCGAGGC--GGUGCUCGGGCGg- -3'
miRNA:   3'- aaaUGCUCCGgcUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 79350 0.7 0.625591
Target:  5'- -cUGCGAGGCCc---GCCCGGACc-- -3'
miRNA:   3'- aaAUGCUCCGGcucaCGGGCCUGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.