Results 1 - 20 of 794 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 257 | 0.69 | 0.701204 |
Target: 5'- gCGGCGGCGGCuGCGgcGGCgGCUgCGGCGg -3' miRNA: 3'- aGUUGUCGCUGuCGC--UCG-CGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 293 | 0.69 | 0.701204 |
Target: 5'- gCGGCGGCGGCuGCGgcGGCgGCUgCGGCGg -3' miRNA: 3'- aGUUGUCGCUGuCGC--UCG-CGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 329 | 0.75 | 0.352683 |
Target: 5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3' miRNA: 3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 393 | 0.73 | 0.463513 |
Target: 5'- gCGGCGGCGGCGGCGgcAGCGguccuggucCCgCGACGg -3' miRNA: 3'- aGUUGUCGCUGUCGC--UCGC---------GG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 435 | 0.69 | 0.701204 |
Target: 5'- -gGGCGGCGccggcgcggGCGGCGGG-GCCCGGgGg -3' miRNA: 3'- agUUGUCGC---------UGUCGCUCgCGGGCUgC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 607 | 0.74 | 0.418659 |
Target: 5'- -----cGCGGagGGCGAGUGCCCGACGc -3' miRNA: 3'- aguuguCGCUg-UCGCUCGCGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 638 | 0.66 | 0.838419 |
Target: 5'- -uGGCGGCGGCcGCcAGCGCcgcguccCCGGCGc -3' miRNA: 3'- agUUGUCGCUGuCGcUCGCG-------GGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1307 | 0.66 | 0.84725 |
Target: 5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3' miRNA: 3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1415 | 0.76 | 0.308244 |
Target: 5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3' miRNA: 3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1443 | 0.71 | 0.540046 |
Target: 5'- gCAcCAGCGGCGGCGccucGGCGUgCGGCu -3' miRNA: 3'- aGUuGUCGCUGUCGC----UCGCGgGCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1491 | 0.68 | 0.740513 |
Target: 5'- cCGACGGCuugcaGCAGCGggacuugcAGUGCCuCGACGu -3' miRNA: 3'- aGUUGUCGc----UGUCGC--------UCGCGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1560 | 0.66 | 0.839231 |
Target: 5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3' miRNA: 3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 1889 | 0.66 | 0.850405 |
Target: 5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3' miRNA: 3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2222 | 0.68 | 0.75013 |
Target: 5'- gCAGguGCGAgAGCccgccGCGCaCCGGCGg -3' miRNA: 3'- aGUUguCGCUgUCGcu---CGCG-GGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2384 | 0.78 | 0.23248 |
Target: 5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3' miRNA: 3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2442 | 0.72 | 0.520449 |
Target: 5'- cUCGGcCAGCGcCucggggucgaaGGCGAGCGCCgGGCGc -3' miRNA: 3'- -AGUU-GUCGCuG-----------UCGCUCGCGGgCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2454 | 0.73 | 0.445262 |
Target: 5'- cCGACAGCGGCAcGCGcucuGCGCCgGAgCGc -3' miRNA: 3'- aGUUGUCGCUGU-CGCu---CGCGGgCU-GC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2532 | 0.68 | 0.759645 |
Target: 5'- gCGGCAGUaGGCcGCcAGCGCCgCGGCGc -3' miRNA: 3'- aGUUGUCG-CUGuCGcUCGCGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2595 | 0.68 | 0.740513 |
Target: 5'- gCGGCGGaagccgccguCGGCGGCGGGgcCGCCgGGCGg -3' miRNA: 3'- aGUUGUC----------GCUGUCGCUC--GCGGgCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 2657 | 0.69 | 0.68117 |
Target: 5'- gCAGCGGCGGCucccgccGCGcuGGgGaCCCGGCGg -3' miRNA: 3'- aGUUGUCGCUGu------CGC--UCgC-GGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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