miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 137923 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33835 0.72 0.478893
Target:  5'- gGCG-CGGGCCCccUGGCGCUG-GGCGg -3'
miRNA:   3'- aUGUaGCUCGGG--ACCGUGACgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 112435 1.06 0.002525
Target:  5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3'
miRNA:   3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 107184 0.68 0.691028
Target:  5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3'
miRNA:   3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 11907 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 80153 0.7 0.56782
Target:  5'- gACG-CGGGCCCUGGCGCcGCcguccGCGUc -3'
miRNA:   3'- aUGUaGCUCGGGACCGUGaCGc----UGCA- -5'
23582 5' -57.6 NC_005261.1 + 90416 0.66 0.815684
Target:  5'- gUACGU-GAGCgCCcuggUGGCGCUGCGcGCGc -3'
miRNA:   3'- -AUGUAgCUCG-GG----ACCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 7989 0.66 0.815684
Target:  5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3'
miRNA:   3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5'
23582 5' -57.6 NC_005261.1 + 42423 0.67 0.731234
Target:  5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 60710 0.67 0.750852
Target:  5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3'
miRNA:   3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33801 0.67 0.72129
Target:  5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGac----CGugACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 28049 0.67 0.72129
Target:  5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3'
miRNA:   3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 73232 0.67 0.72129
Target:  5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3'
miRNA:   3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 12892 0.67 0.760506
Target:  5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3'
miRNA:   3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 57956 0.69 0.636619
Target:  5'- gUGCuGUCGGGCggccuggagacguaCCUGGCGC-GCGGCGg -3'
miRNA:   3'- -AUG-UAGCUCG--------------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 92574 0.69 0.629398
Target:  5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3'
miRNA:   3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5'
23582 5' -57.6 NC_005261.1 + 29892 0.69 0.623209
Target:  5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 101265 0.66 0.80686
Target:  5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3'
miRNA:   3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.