miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 80858 0.67 0.982363
Target:  5'- aGCuGCUGGcgggcgucGGgccgcGCGGGGAGGUcGUGCCg -3'
miRNA:   3'- -CG-CGACU--------UCa----UGCUCCUCUA-CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 79088 0.74 0.748783
Target:  5'- aGCGCcuucaUGggGUugcugcggagGCG-GGAGAUGUACCg -3'
miRNA:   3'- -CGCG-----ACuuCA----------UGCuCCUCUACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 78523 0.68 0.966397
Target:  5'- gGCGCgagcgGAGGcgGCGAGGGGAagggGaGCCg -3'
miRNA:   3'- -CGCGa----CUUCa-UGCUCCUCUa---CaUGGa -5'
23583 5' -50.8 NC_005261.1 + 76173 0.7 0.937337
Target:  5'- gGCGCUGcAGUACGAGcGGGGccugggcGUGCUg -3'
miRNA:   3'- -CGCGACuUCAUGCUC-CUCUa------CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 76041 0.66 0.992889
Target:  5'- cGCGCUGcacauGGUcuucaacgucaACGAGGGGA---GCCUg -3'
miRNA:   3'- -CGCGACu----UCA-----------UGCUCCUCUacaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 71566 0.68 0.966397
Target:  5'- gGCGCUGggGcUGCucgcgGAGGAGGcg-GCCg -3'
miRNA:   3'- -CGCGACuuC-AUG-----CUCCUCUacaUGGa -5'
23583 5' -50.8 NC_005261.1 + 58295 0.7 0.915137
Target:  5'- cGCGCcGggGggcGCGGGGAGggGgcgGCCc -3'
miRNA:   3'- -CGCGaCuuCa--UGCUCCUCuaCa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 57955 0.69 0.94224
Target:  5'- cGUGCUGucGgGCGGccuGGAGAcGUACCUg -3'
miRNA:   3'- -CGCGACuuCaUGCU---CCUCUaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 56966 0.67 0.985079
Target:  5'- cGCGCaGgcGgcCGGGGAGAacucgcgcuuuuacgUGUGCCc -3'
miRNA:   3'- -CGCGaCuuCauGCUCCUCU---------------ACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 55297 0.76 0.665631
Target:  5'- gGCGCUGAagagccGGUGCGGGGGGucaggggGUGCUg -3'
miRNA:   3'- -CGCGACU------UCAUGCUCCUCua-----CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 51909 0.77 0.618759
Target:  5'- cGCGCUGAAGUACGuggccagcacgcuGGAGGgcgacGUGCCc -3'
miRNA:   3'- -CGCGACUUCAUGCu------------CCUCUa----CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 45028 0.66 0.992889
Target:  5'- cGCuGCUGGAGccCGAGGcuGUGUACa- -3'
miRNA:   3'- -CG-CGACUUCauGCUCCucUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 39240 0.66 0.992889
Target:  5'- aCGCUGAAGauugcCGAGGAcGAcGUGCUc -3'
miRNA:   3'- cGCGACUUCau---GCUCCU-CUaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 37606 0.66 0.992889
Target:  5'- cGCGCgccuGUGCGAGcGGGAccUGcACCUg -3'
miRNA:   3'- -CGCGacuuCAUGCUC-CUCU--ACaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 35837 0.67 0.982363
Target:  5'- aGCGCUGGc--GCGAGGAGcUGcgcGCCg -3'
miRNA:   3'- -CGCGACUucaUGCUCCUCuACa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 35568 0.67 0.984338
Target:  5'- gGCGCUGGGcgccGCgGAGGAGGUGcugcggGCCg -3'
miRNA:   3'- -CGCGACUUca--UG-CUCCUCUACa-----UGGa -5'
23583 5' -50.8 NC_005261.1 + 34878 0.68 0.975312
Target:  5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3'
miRNA:   3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 34620 0.68 0.975312
Target:  5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3'
miRNA:   3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 34491 0.67 0.977859
Target:  5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3'
miRNA:   3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5'
23583 5' -50.8 NC_005261.1 + 32793 0.69 0.95128
Target:  5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3'
miRNA:   3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.