Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 5' | -50.8 | NC_005261.1 | + | 55297 | 0.76 | 0.665631 |
Target: 5'- gGCGCUGAagagccGGUGCGGGGGGucaggggGUGCUg -3' miRNA: 3'- -CGCGACU------UCAUGCUCCUCua-----CAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 56966 | 0.67 | 0.985079 |
Target: 5'- cGCGCaGgcGgcCGGGGAGAacucgcgcuuuuacgUGUGCCc -3' miRNA: 3'- -CGCGaCuuCauGCUCCUCU---------------ACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 57955 | 0.69 | 0.94224 |
Target: 5'- cGUGCUGucGgGCGGccuGGAGAcGUACCUg -3' miRNA: 3'- -CGCGACuuCaUGCU---CCUCUaCAUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 58295 | 0.7 | 0.915137 |
Target: 5'- cGCGCcGggGggcGCGGGGAGggGgcgGCCc -3' miRNA: 3'- -CGCGaCuuCa--UGCUCCUCuaCa--UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 71566 | 0.68 | 0.966397 |
Target: 5'- gGCGCUGggGcUGCucgcgGAGGAGGcg-GCCg -3' miRNA: 3'- -CGCGACuuC-AUG-----CUCCUCUacaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 76041 | 0.66 | 0.992889 |
Target: 5'- cGCGCUGcacauGGUcuucaacgucaACGAGGGGA---GCCUg -3' miRNA: 3'- -CGCGACu----UCA-----------UGCUCCUCUacaUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 76173 | 0.7 | 0.937337 |
Target: 5'- gGCGCUGcAGUACGAGcGGGGccugggcGUGCUg -3' miRNA: 3'- -CGCGACuUCAUGCUC-CUCUa------CAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 78523 | 0.68 | 0.966397 |
Target: 5'- gGCGCgagcgGAGGcgGCGAGGGGAagggGaGCCg -3' miRNA: 3'- -CGCGa----CUUCa-UGCUCCUCUa---CaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 79088 | 0.74 | 0.748783 |
Target: 5'- aGCGCcuucaUGggGUugcugcggagGCG-GGAGAUGUACCg -3' miRNA: 3'- -CGCG-----ACuuCA----------UGCuCCUCUACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 80858 | 0.67 | 0.982363 |
Target: 5'- aGCuGCUGGcgggcgucGGgccgcGCGGGGAGGUcGUGCCg -3' miRNA: 3'- -CG-CGACU--------UCa----UGCUCCUCUA-CAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 81670 | 0.67 | 0.984338 |
Target: 5'- cCGCcGAGGUGCGAGaaGGAcGUGCCc -3' miRNA: 3'- cGCGaCUUCAUGCUCc-UCUaCAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 85570 | 0.68 | 0.969896 |
Target: 5'- cCGCUcGAAGUGCGcgcggggccgggggcGGAGAcgUGUACCg -3' miRNA: 3'- cGCGA-CUUCAUGCu--------------CCUCU--ACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 86927 | 0.66 | 0.99181 |
Target: 5'- gGCGCcGgcGUgcGCGAGGuAGGUGgccgcgGCCa -3' miRNA: 3'- -CGCGaCuuCA--UGCUCC-UCUACa-----UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 94226 | 0.68 | 0.975312 |
Target: 5'- cGCGCcGAAGccggGCuGGGAGGUGU-CCa -3' miRNA: 3'- -CGCGaCUUCa---UGcUCCUCUACAuGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 94727 | 0.66 | 0.989264 |
Target: 5'- gGCGCUGgcGcaGCGcAGGAGGUccGCCg -3' miRNA: 3'- -CGCGACuuCa-UGC-UCCUCUAcaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 94908 | 0.67 | 0.982363 |
Target: 5'- cGCGCUGGAG-GCGAGGaAGGaGcGCUUc -3' miRNA: 3'- -CGCGACUUCaUGCUCC-UCUaCaUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 98655 | 0.66 | 0.992889 |
Target: 5'- gGCGCUGggGagggaGAGGGGGacagACCg -3' miRNA: 3'- -CGCGACuuCaug--CUCCUCUaca-UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 98819 | 0.67 | 0.982363 |
Target: 5'- gGCGUgccgGAAG-ACGGGGGGGUGgGCg- -3' miRNA: 3'- -CGCGa---CUUCaUGCUCCUCUACaUGga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 102646 | 0.69 | 0.946433 |
Target: 5'- gGCGCUGggGUccggGCGAuGGAGGauagcgcggcggcUGcUGCCg -3' miRNA: 3'- -CGCGACuuCA----UGCU-CCUCU-------------AC-AUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 103526 | 0.67 | 0.982156 |
Target: 5'- cCGCUGAggcucgaGGUGCGAGGGGccc-ACCg -3' miRNA: 3'- cGCGACU-------UCAUGCUCCUCuacaUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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