miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 27244 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 131761 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 34620 0.68 0.975312
Target:  5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3'
miRNA:   3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 109677 0.68 0.975312
Target:  5'- gGUGCUGAGcggACGAGGGacGAUGgccgcGCCUa -3'
miRNA:   3'- -CGCGACUUca-UGCUCCU--CUACa----UGGA- -5'
23583 5' -50.8 NC_005261.1 + 94226 0.68 0.975312
Target:  5'- cGCGCcGAAGccggGCuGGGAGGUGU-CCa -3'
miRNA:   3'- -CGCGaCUUCa---UGcUCCUCUACAuGGa -5'
23583 5' -50.8 NC_005261.1 + 34878 0.68 0.975312
Target:  5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3'
miRNA:   3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 22331 0.67 0.977116
Target:  5'- gGCGCUGAcgacggcggggaggAGgcgGCGAgGGAGAU-UGCCg -3'
miRNA:   3'- -CGCGACU--------------UCa--UGCU-CCUCUAcAUGGa -5'
23583 5' -50.8 NC_005261.1 + 115054 0.67 0.977859
Target:  5'- gGCGaaGggGgGCGGGGuggGGAUGUGCUUc -3'
miRNA:   3'- -CGCgaCuuCaUGCUCC---UCUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 34491 0.67 0.977859
Target:  5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3'
miRNA:   3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5'
23583 5' -50.8 NC_005261.1 + 103526 0.67 0.982156
Target:  5'- cCGCUGAggcucgaGGUGCGAGGGGccc-ACCg -3'
miRNA:   3'- cGCGACU-------UCAUGCUCCUCuacaUGGa -5'
23583 5' -50.8 NC_005261.1 + 80858 0.67 0.982363
Target:  5'- aGCuGCUGGcgggcgucGGgccgcGCGGGGAGGUcGUGCCg -3'
miRNA:   3'- -CG-CGACU--------UCa----UGCUCCUCUA-CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 35837 0.67 0.982363
Target:  5'- aGCGCUGGc--GCGAGGAGcUGcgcGCCg -3'
miRNA:   3'- -CGCGACUucaUGCUCCUCuACa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 25617 0.67 0.982363
Target:  5'- -gGCUGAGGUGCGAGGcGcgGUc--- -3'
miRNA:   3'- cgCGACUUCAUGCUCCuCuaCAugga -5'
23583 5' -50.8 NC_005261.1 + 94908 0.67 0.982363
Target:  5'- cGCGCUGGAG-GCGAGGaAGGaGcGCUUc -3'
miRNA:   3'- -CGCGACUUCaUGCUCC-UCUaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 98819 0.67 0.982363
Target:  5'- gGCGUgccgGAAG-ACGGGGGGGUGgGCg- -3'
miRNA:   3'- -CGCGa---CUUCaUGCUCCUCUACaUGga -5'
23583 5' -50.8 NC_005261.1 + 13660 0.67 0.983764
Target:  5'- aGCGCgu-GGUGCGcgagcggcgcgccuGGGAGAUG-GCCg -3'
miRNA:   3'- -CGCGacuUCAUGC--------------UCCUCUACaUGGa -5'
23583 5' -50.8 NC_005261.1 + 81670 0.67 0.984338
Target:  5'- cCGCcGAGGUGCGAGaaGGAcGUGCCc -3'
miRNA:   3'- cGCGaCUUCAUGCUCc-UCUaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 35568 0.67 0.984338
Target:  5'- gGCGCUGGGcgccGCgGAGGAGGUGcugcggGCCg -3'
miRNA:   3'- -CGCGACUUca--UG-CUCCUCUACa-----UGGa -5'
23583 5' -50.8 NC_005261.1 + 56966 0.67 0.985079
Target:  5'- cGCGCaGgcGgcCGGGGAGAacucgcgcuuuuacgUGUGCCc -3'
miRNA:   3'- -CGCGaCuuCauGCUCCUCU---------------ACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 132667 0.67 0.98614
Target:  5'- cGCGUguGGGUGCGAGGAcaaGAUGgGCUUc -3'
miRNA:   3'- -CGCGacUUCAUGCUCCU---CUACaUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.