miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127888 0.66 0.839008
Target:  5'- gCgCCGG-CGCCcgucgGGCCCGGGCcUGGGc -3'
miRNA:   3'- -GgGGUCuGUGGa----UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 54465 0.66 0.839008
Target:  5'- gCUCGGGCGCUgcGACCCGGcCGUGGc -3'
miRNA:   3'- gGGGUCUGUGGa-UUGGGCUcGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 40798 0.66 0.839008
Target:  5'- gCCCAGAC-CCgcGCCCaAGgGCaGGc -3'
miRNA:   3'- gGGGUCUGuGGauUGGGcUCgCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 94990 0.66 0.839008
Target:  5'- gCCCCGcgcGCGCCccGCCCugcGGgGCGGGc -3'
miRNA:   3'- -GGGGUc--UGUGGauUGGGc--UCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 3346 0.66 0.839008
Target:  5'- aCCaCCGaACGCacagcaggGGCCCGcgggGGCGCGGGc -3'
miRNA:   3'- -GG-GGUcUGUGga------UUGGGC----UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 84845 0.66 0.839008
Target:  5'- gCCCAG-CACC--ACCgCGGGcCGCGuGGc -3'
miRNA:   3'- gGGGUCuGUGGauUGG-GCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 72846 0.66 0.839008
Target:  5'- gCCaGGGCGCCagcGCCCaGGCGUGGa -3'
miRNA:   3'- gGGgUCUGUGGau-UGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 96935 0.66 0.839008
Target:  5'- aCCCgAGACGCCca---CGGGCgcaucgGCGGGg -3'
miRNA:   3'- -GGGgUCUGUGGauuggGCUCG------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 132742 0.66 0.839008
Target:  5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3'
miRNA:   3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109253 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 32999 0.66 0.839008
Target:  5'- gCCgCAGAUcacggccgcgGCCgcgGCCCGcGCgGCGGGa -3'
miRNA:   3'- -GGgGUCUG----------UGGau-UGGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 28225 0.66 0.839008
Target:  5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3'
miRNA:   3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 4545 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109062 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 63227 0.66 0.834202
Target:  5'- aCUCCAGggGCgggucguucuuggcgAUCUGcACCCG-GCGCGGGc -3'
miRNA:   3'- -GGGGUC--UG---------------UGGAU-UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127695 0.66 0.834202
Target:  5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3'
miRNA:   3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109781 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.